{ "type": "genome", "identifier": "GCA_023701045.1", "organism": "Pseudomonas sagittaria", "title": "Pseudomonas sagittaria", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University of Tehran", "publication": [ {} ], "properties": { "assembly_accession": "GCA_023701045.1", "bioproject": "PRJNA741716", "biosample": "SAMN28659045", "wgs_master": "JAMPXT000000000.1", "refseq_category": "na", "taxid": "1135990", "species_taxid": "1135990", "organism_name": "Pseudomonas sagittaria", "infraspecific_name": "", "isolate": "R2F_R2FSRR_metabat.46", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/06/09", "asm_name": "ASM2370104v1", "submitter": "University of Tehran", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/701/045/GCA_023701045.1_ASM2370104v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-06-09", "dateModified": "2022-06-09", "datePublished": "2022-06-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas sagittaria" ], "sample_taxid": [ "1135990" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Iran: Tehran" ], "sample_host_location_id": [], "data_size": "0.703 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 15.0, "max": 15.0 }, "completeness": 37.5, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2565676", "Number of Sequences": "477", "Longest Sequences (bp)": "69174", "N50 (bp)": "5856", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.7", "Number of CDSs": "1972", "Average Protein Length": "300.2", "Coding Ratio (%)": "69.2", "Number of rRNAs": "0", "Number of tRNAs": "30", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas sagittaria", "strain": "strain=JCM 18195", "accession": "GCA_900115715.1", "taxid": 1135990, "species_taxid": 1135990, "relation_to_type": "type", "validated": true, "ani": 98.6732, "matched_fragments": 586, "total_fragments": 612, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas linyingensis", "strain": "strain=LMG 25967", "accession": "GCA_900109175.1", "taxid": 915471, "species_taxid": 915471, "relation_to_type": "type", "validated": true, "ani": 92.1569, "matched_fragments": 517, "total_fragments": 612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas aromaticivorans", "strain": "strain=MAP12", "accession": "GCA_019097855.1", "taxid": 2849492, "species_taxid": 2849492, "relation_to_type": "type", "validated": true, "ani": 88.7088, "matched_fragments": 481, "total_fragments": 612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas oryzae", "strain": "strain=KCTC 32247", "accession": "GCA_900104805.1", "taxid": 1392877, "species_taxid": 1392877, "relation_to_type": "type", "validated": true, "ani": 88.3902, "matched_fragments": 517, "total_fragments": 612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azotobacter chroococcum subsp. isscasi", "strain": "strain=P205", "accession": "GCA_004327895.1", "taxid": 2528971, "species_taxid": 353, "relation_to_type": "type", "validated": true, "ani": 82.7794, "matched_fragments": 378, "total_fragments": 612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azotobacter chroococcum", "strain": "strain=ATCC 9043", "accession": "GCA_004327905.1", "taxid": 353, "species_taxid": 353, "relation_to_type": "type", "validated": true, "ani": 82.7741, "matched_fragments": 384, "total_fragments": 612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azotobacter beijerinckii", "strain": "strain=DSM 378", "accession": "GCA_900110885.1", "taxid": 170623, "species_taxid": 170623, "relation_to_type": "type", "validated": true, "ani": 82.4884, "matched_fragments": 355, "total_fragments": 612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas thermotolerans", "strain": "strain=DSM 14292", "accession": "GCA_000364625.1", "taxid": 157784, "species_taxid": 157784, "relation_to_type": "type", "validated": true, "ani": 81.9584, "matched_fragments": 342, "total_fragments": 612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas campaniensis", "strain": "strain=5AG", "accession": "GCA_014193375.1", "taxid": 213554, "species_taxid": 213554, "relation_to_type": "type", "validated": true, "ani": 77.7862, "matched_fragments": 181, "total_fragments": 612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera phenylacetica", "strain": "strain=B4P", "accession": "GCA_000310225.1", "taxid": 164400, "species_taxid": 164400, "relation_to_type": "type", "validated": true, "ani": 77.2046, "matched_fragments": 149, "total_fragments": 612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas saliphila", "strain": "strain=LCB169", "accession": "GCA_002930105.1", "taxid": 1848458, "species_taxid": 1848458, "relation_to_type": "type", "validated": true, "ani": 76.8158, "matched_fragments": 122, "total_fragments": 612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfurivermis fontis", "strain": "strain=JG42", "accession": "GCA_004001245.1", "taxid": 1972068, "species_taxid": 1972068, "relation_to_type": "type", "validated": true, "ani": 76.7495, "matched_fragments": 96, "total_fragments": 612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioalkalivibrio sulfidiphilus", "strain": "strain=HL-EbGR7", "accession": "GCA_000021985.1", "taxid": 1033854, "species_taxid": 1033854, "relation_to_type": "type", "validated": true, "ani": 76.7249, "matched_fragments": 101, "total_fragments": 612, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 37.5, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900115715.1", "gtdb_species": "s__Pseudomonas_K sagittaria", "ani": 98.6732, "matched_fragments": 586, "total_fragments": 612, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_K", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_900109175.1", 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