{ "type": "genome", "identifier": "GCA_023701265.1", "organism": "Desulfuromonadales bacterium", "title": "Desulfuromonadales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Tehran", "publication": [ {} ], "properties": { "assembly_accession": "GCA_023701265.1", "bioproject": "PRJNA741716", "biosample": "SAMN28659034", "wgs_master": "JAMPXI000000000.1", "refseq_category": "na", "taxid": "2099678", "species_taxid": "2099678", "organism_name": "Desulfuromonadales bacterium", "infraspecific_name": "", "isolate": "R2F_R2FSRR_metabat.27", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/06/09", "asm_name": "ASM2370126v1", "submitter": "University of Tehran", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/701/265/GCA_023701265.1_ASM2370126v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-06-09", "dateModified": "2022-06-09", "datePublished": "2022-06-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Desulfuromonadales bacterium" ], "sample_taxid": [ "2099678" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Iran: Tehran" ], "sample_host_location_id": [], "data_size": "0.770 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 15.0, "max": 15.0 }, "completeness": 76.52, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2724832", "Number of Sequences": "180", "Longest Sequences (bp)": "82441", "N50 (bp)": "19780", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.3", "Number of CDSs": "2377", "Average Protein Length": "316.2", "Coding Ratio (%)": "82.8", "Number of rRNAs": "1", "Number of tRNAs": "40", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Desulfuromonas versatilis", "strain": "strain=NIT-T3", "accession": "GCA_019704135.1", "taxid": 2802975, "species_taxid": 2802975, "relation_to_type": "type", "validated": true, "ani": 78.4792, "matched_fragments": 269, "total_fragments": 810, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfuromonas soudanensis", "strain": "strain=WTL", "accession": "GCA_001278055.1", "taxid": 1603606, "species_taxid": 1603606, "relation_to_type": "type", "validated": true, "ani": 78.2715, "matched_fragments": 206, "total_fragments": 810, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geothermobacter ehrlichii", "strain": "strain=SS015", "accession": "GCA_008124615.1", "taxid": 213224, "species_taxid": 213224, "relation_to_type": "type", "validated": true, "ani": 77.9682, "matched_fragments": 210, "total_fragments": 810, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfuromonas acetexigens", "strain": "", "accession": "GCA_900111775.1", "taxid": 38815, "species_taxid": 38815, "relation_to_type": "type", "validated": true, "ani": 77.7532, "matched_fragments": 199, "total_fragments": 810, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfuromonas acetexigens", "strain": "strain=2873", "accession": "GCA_007051125.1", "taxid": 38815, "species_taxid": 38815, "relation_to_type": "type", "validated": true, "ani": 77.7416, "matched_fragments": 199, "total_fragments": 810, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oryzomonas japonica", "strain": "strain=Red96", "accession": "GCA_008802365.1", "taxid": 2603858, "species_taxid": 2603858, "relation_to_type": "type", "validated": true, "ani": 77.6926, "matched_fragments": 92, "total_fragments": 810, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geobacter pickeringii", "strain": "strain=G13", "accession": "GCA_000817955.1", "taxid": 345632, "species_taxid": 345632, "relation_to_type": "type", "validated": true, "ani": 77.596, "matched_fragments": 109, "total_fragments": 810, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geobacter argillaceus", "strain": "strain=ATCC BAA-1139", "accession": "GCA_007830735.1", "taxid": 345631, "species_taxid": 345631, "relation_to_type": "type", "validated": true, "ani": 77.5718, "matched_fragments": 112, "total_fragments": 810, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geobacter luticola", "strain": "strain=JCM 17780", "accession": "GCA_018476905.1", "taxid": 1114878, "species_taxid": 1114878, "relation_to_type": "type", "validated": true, "ani": 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"ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 76.52, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_012026975.1", "gtdb_species": "s__VAUL01 sp012026975", "ani": 85.766, "matched_fragments": 594, "total_fragments": 810, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Desulfuromonadales;f__BM103;g__VAUL01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_005774545.1", "gtdb_species": "s__VAUL01 sp005774545", "ani": 82.649, "matched_fragments": 519, "total_fragments": 810, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Desulfuromonadales;f__BM103;g__VAUL01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.97", 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