{ "type": "genome", "identifier": "GCA_023701285.1", "organism": "Candidatus Didemnitutus sp.", "title": "Candidatus Didemnitutus sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University of Tehran", "publication": [ {} ], "properties": { "assembly_accession": "GCA_023701285.1", "bioproject": "PRJNA741716", "biosample": "SAMN28659033", "wgs_master": "JAMPXH000000000.1", "refseq_category": "na", "taxid": "2814259", "species_taxid": "2814259", "organism_name": "Candidatus Didemnitutus sp.", "infraspecific_name": "", "isolate": "R2F_R2FSRR_metabat.26", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/06/09", "asm_name": "ASM2370128v1", "submitter": "University of Tehran", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/701/285/GCA_023701285.1_ASM2370128v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-06-09", "dateModified": "2022-06-09", "datePublished": "2022-06-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Candidatus Didemnitutus sp." ], "sample_taxid": [ "2814259" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Iran: Tehran" ], "sample_host_location_id": [], "data_size": "1.103 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 15.0, "max": 15.0 }, "completeness": 63.54, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4019905", "Number of Sequences": "220", "Longest Sequences (bp)": "89515", "N50 (bp)": "29601", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.7", "Number of CDSs": "3073", "Average Protein Length": "366.7", "Coding Ratio (%)": "84.1", "Number of rRNAs": "0", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rariglobus hedericola", "strain": "strain=53C-WASEF", "accession": "GCA_007559335.1", "taxid": 2597822, "species_taxid": 2597822, "relation_to_type": "type", "validated": true, "ani": 77.6612, "matched_fragments": 224, "total_fragments": 1233, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nibricoccus aquaticus", "strain": "strain=HZ-65", "accession": "GCA_002310495.1", "taxid": 2576891, "species_taxid": 2576891, "relation_to_type": "type", "validated": true, "ani": 77.5079, "matched_fragments": 264, "total_fragments": 1233, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cephaloticoccus primus", "strain": "strain=CAG34", "accession": "GCA_001580015.1", "taxid": 1548207, "species_taxid": 1548207, "relation_to_type": "type", "validated": true, "ani": 77.3726, "matched_fragments": 171, "total_fragments": 1233, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geminisphaera colitermitum", "strain": "strain=TAV2", "accession": "GCA_000171235.2", "taxid": 1148786, "species_taxid": 1148786, "relation_to_type": "type", "validated": true, "ani": 77.271, "matched_fragments": 197, "total_fragments": 1233, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Opitutus terrae", "strain": "strain=PB90-1", "accession": "GCA_000019965.1", "taxid": 107709, "species_taxid": 107709, "relation_to_type": "type", "validated": true, "ani": 77.2602, "matched_fragments": 287, "total_fragments": 1233, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ereboglobus luteus", "strain": "strain=Ho45", "accession": "GCA_003096195.1", "taxid": 1796921, "species_taxid": 1796921, "relation_to_type": "type", "validated": true, "ani": 77.1021, "matched_fragments": 218, "total_fragments": 1233, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteolibacter ambystomatis", "strain": "strain=32A", "accession": "GCA_018137965.1", "taxid": 2824561, "species_taxid": 2824561, "relation_to_type": "type", "validated": true, "ani": 75.6758, "matched_fragments": 79, "total_fragments": 1233, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fulvimonas soli", "strain": "strain=LMG 19981", "accession": "GCA_006352285.1", "taxid": 155197, "species_taxid": 155197, "relation_to_type": "type", "validated": true, "ani": 75.0838, "matched_fragments": 128, "total_fragments": 1233, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fulvimonas soli", "strain": "strain=DSM 14263", "accession": "GCA_003148905.1", "taxid": 155197, "species_taxid": 155197, "relation_to_type": "type", "validated": true, "ani": 75.0801, "matched_fragments": 134, "total_fragments": 1233, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agrococcus terreus", "strain": "strain=CGMCC 1.6960", "accession": "GCA_014645235.1", "taxid": 574649, "species_taxid": 574649, "relation_to_type": "type", "validated": true, "ani": 74.885, "matched_fragments": 138, "total_fragments": 1233, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces tardus", "strain": "strain=SJ-23", "accession": "GCA_003710805.1", "taxid": 2583849, "species_taxid": 2583849, "relation_to_type": "type", "validated": true, "ani": 74.8818, "matched_fragments": 124, "total_fragments": 1233, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agrococcus sediminis", "strain": "strain=NS18", "accession": "GCA_007923295.1", "taxid": 2599924, "species_taxid": 2599924, "relation_to_type": "type", "validated": true, "ani": 74.8715, "matched_fragments": 97, "total_fragments": 1233, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces gougerotii", "strain": "strain=NBRC 13043", "accession": "GCA_011170145.1", "taxid": 53448, "species_taxid": 53448, "relation_to_type": "suspected-type", "validated": true, "ani": 74.8415, "matched_fragments": 125, "total_fragments": 1233, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces gougerotii", "strain": "strain=JCM 4136", "accession": "GCA_014648955.1", "taxid": 53448, "species_taxid": 53448, "relation_to_type": "suspected-type", "validated": true, "ani": 74.8372, "matched_fragments": 126, "total_fragments": 1233, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces diastaticus subsp. diastaticus", "strain": "strain=NBRC 13412", "accession": "GCA_011170125.1", "taxid": 68040, "species_taxid": 1956, "relation_to_type": "suspected-type", "validated": true, "ani": 74.8018, "matched_fragments": 134, "total_fragments": 1233, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces diastaticus subsp. diastaticus", "strain": "strain=JCM 4128", "accession": "GCA_014648935.1", "taxid": 68040, "species_taxid": 1956, "relation_to_type": "suspected-type", "validated": true, "ani": 74.7949, "matched_fragments": 135, "total_fragments": 1233, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Frankia torreyi", "strain": "strain=CpI1", "accession": "GCA_000948395.1", "taxid": 1856, "species_taxid": 1856, "relation_to_type": "type", "validated": true, "ani": 74.7343, "matched_fragments": 125, "total_fragments": 1233, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 63.54, "contamination": 4.17, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_017991595.1", "gtdb_species": "s__Didemnitutus sp017991595", "ani": 92.7093, "matched_fragments": 768, "total_fragments": 1233, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Didemnitutus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016217545.1", "gtdb_species": "s__Didemnitutus sp016217545", "ani": 82.1274, "matched_fragments": 683, "total_fragments": 1233, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Didemnitutus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016187945.1", "gtdb_species": "s__Didemnitutus sp016187945", "ani": 81.7073, "matched_fragments": 678, "total_fragments": 1233, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Didemnitutus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013822585.1", "gtdb_species": "s__Didemnitutus sp013822585", "ani": 81.434, "matched_fragments": 417, "total_fragments": 1233, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Didemnitutus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016187925.1", "gtdb_species": "s__Didemnitutus sp016187925", "ani": 81.3858, "matched_fragments": 579, "total_fragments": 1233, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Didemnitutus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013821985.1", "gtdb_species": "s__Didemnitutus sp013821985", "ani": 80.3841, "matched_fragments": 508, "total_fragments": 1233, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Didemnitutus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900104925.1", "gtdb_species": "s__Lacunisphaera sp900104925", "ani": 80.3612, "matched_fragments": 452, "total_fragments": 1233, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Lacunisphaera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016795565.1", "gtdb_species": "s__Lacunisphaera sp016795565", "ani": 80.2816, "matched_fragments": 473, "total_fragments": 1233, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Lacunisphaera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004118375.1", "gtdb_species": "s__Lacunisphaera lenta", "ani": 80.0824, "matched_fragments": 491, "total_fragments": 1233, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Lacunisphaera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001746835.1", "gtdb_species": "s__Lacunisphaera limnophila", "ani": 80.0259, "matched_fragments": 467, "total_fragments": 1233, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Lacunisphaera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Verrucomicrobiota", "c__Verrucomicrobiae", "o__Opitutales", "f__Opitutaceae", "g__Didemnitutus", "s__Didemnitutus sp023701285" ], "_genome_taxon": [ "Candidatus", "Didemnitutus", "sp.", "d__Bacteria", "p__Verrucomicrobiota", "c__Verrucomicrobiae", "o__Opitutales", "f__Opitutaceae", "g__Didemnitutus", "s__Didemnitutus sp023701285", "Bacteria", "Verrucomicrobiota", "Verrucomicrobiae", "Opitutales", "Opitutaceae", "Didemnitutus", "Didemnitutus", "sp023701285" ], "_meo": [ { "id": "MEO_0000366", "label": "ground water" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }