{ "type": "genome", "identifier": "GCA_023701465.1", "organism": "Arenimonas sp.", "title": "Arenimonas sp.", "description": "contaminated; derived from metagenome; fragmented assembly", "data type": "Genome sequencing and assembly", "organization": "University of Tehran", "publication": [ {} ], "properties": { "assembly_accession": "GCA_023701465.1", "bioproject": "PRJNA741716", "biosample": "SAMN28659025", "wgs_master": "JAMPWZ000000000.1", "refseq_category": "na", "taxid": "1872635", "species_taxid": "1872635", "organism_name": "Arenimonas sp.", "infraspecific_name": "", "isolate": "R2F_R2FSRR_metabat.2", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/06/09", "asm_name": "ASM2370146v1", "submitter": "University of Tehran", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/701/465/GCA_023701465.1_ASM2370146v1", "excluded_from_refseq": "contaminated; derived from metagenome; fragmented assembly", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-06-09", "dateModified": "2022-06-09", "datePublished": "2022-06-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Arenimonas sp." ], "sample_taxid": [ "1872635" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Iran: Tehran" ], "sample_host_location_id": [], "data_size": "0.348 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 15.0, "max": 15.0 }, "completeness": 41.67, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1295990", "Number of Sequences": "355", "Longest Sequences (bp)": "9616", "N50 (bp)": "3567", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.4", "Number of CDSs": "927", "Average Protein Length": "287.5", "Coding Ratio (%)": "61.7", "Number of rRNAs": "0", "Number of tRNAs": "8", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Arenimonas malthae", "strain": "strain=CC-JY-1", "accession": "GCA_000747075.1", "taxid": 354197, "species_taxid": 354197, "relation_to_type": "type", "validated": true, "ani": 94.808, "matched_fragments": 185, "total_fragments": 226, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas caeni", "strain": "strain=z29", "accession": "GCA_003024235.1", "taxid": 2058085, "species_taxid": 2058085, "relation_to_type": "type", "validated": true, "ani": 86.7908, "matched_fragments": 172, "total_fragments": 226, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas soli", "strain": "strain=CGMCC 1.15905", "accession": "GCA_014643775.1", "taxid": 2269504, "species_taxid": 2269504, "relation_to_type": "type", "validated": true, "ani": 86.0267, "matched_fragments": 174, "total_fragments": 226, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas metalli", "strain": "strain=CF5-1", "accession": "GCA_000747155.1", "taxid": 948077, "species_taxid": 948077, "relation_to_type": "type", "validated": true, "ani": 85.7659, "matched_fragments": 170, "total_fragments": 226, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas donghaensis", "strain": "strain=HO3-R19", "accession": "GCA_000743535.1", "taxid": 375061, "species_taxid": 375061, "relation_to_type": "type", "validated": true, "ani": 85.1657, "matched_fragments": 171, "total_fragments": 226, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas terrae", "strain": "strain=R29", "accession": "GCA_006265115.1", "taxid": 2546226, "species_taxid": 2546226, "relation_to_type": "type", "validated": true, "ani": 85.0923, "matched_fragments": 178, "total_fragments": 226, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vulcaniibacterium gelatinicum", "strain": "strain=R-5-52-3", "accession": "GCA_008033445.1", "taxid": 2598725, "species_taxid": 2598725, "relation_to_type": "type", "validated": true, "ani": 80.0107, "matched_fragments": 132, "total_fragments": 226, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermomonas aquatica", "strain": "strain=SY21", "accession": "GCA_006337105.1", "taxid": 2202149, "species_taxid": 2202149, "relation_to_type": "type", "validated": true, "ani": 78.5401, "matched_fragments": 122, "total_fragments": 226, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 41.67, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000747075.1", "gtdb_species": "s__Arenimonas malthae", "ani": 95.0281, "matched_fragments": 183, "total_fragments": 226, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Arenimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_003497545.1", "gtdb_species": "s__Arenimonas sp003497545", "ani": 92.8281, "matched_fragments": 163, "total_fragments": 226, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Arenimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.43", "min_intra_species_ani": "99.43", "mean_intra_species_af": "0.81", "min_intra_species_af": "0.81", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_001724815.1", "gtdb_species": "s__Arenimonas sp001724815", "ani": 87.0367, "matched_fragments": 174, 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"d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Arenimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000747155.1", "gtdb_species": "s__Arenimonas metalli", "ani": 85.7659, "matched_fragments": 170, "total_fragments": 226, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Arenimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007993735.1", "gtdb_species": "s__Arenimonas daejeonensis", "ani": 85.2314, "matched_fragments": 166, "total_fragments": 226, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Arenimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000743535.1", "gtdb_species": "s__Arenimonas donghaensis", "ani": 85.1657, "matched_fragments": 171, "total_fragments": 226, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Arenimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006265115.1", "gtdb_species": "s__Arenimonas terrae", "ani": 85.0923, "matched_fragments": 178, "total_fragments": 226, "gtdb_taxonomy": 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"genome_size": 3086553.0, "gc_content": 68.199, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.666, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Xanthomonadales", "f__Xanthomonadaceae", "g__Arenimonas", "s__Arenimonas malthae" ], "_genome_taxon": [ "Arenimonas", "sp.", "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Xanthomonadales", "f__Xanthomonadaceae", "g__Arenimonas", "s__Arenimonas malthae", "Bacteria", "Pseudomonadota", "Gammaproteobacteria", "Xanthomonadales", "Xanthomonadaceae", "Arenimonas", "Arenimonas", "malthae" ], "_meo": [ { "id": "MEO_0000366", "label": "ground water" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }