{ "type": "genome", "identifier": "GCA_024102795.1", "organism": "Pirellulaceae bacterium", "title": "Pirellulaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "South China University of Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCA_024102795.1", "bioproject": "PRJNA705238", "biosample": "SAMN18079731", "wgs_master": "JAGFJK000000000.1", "refseq_category": "na", "taxid": "2699754", "species_taxid": "2699754", "organism_name": "Pirellulaceae bacterium", "infraspecific_name": "", "isolate": "mag.21", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/06/30", "asm_name": "ASM2410279v1", "submitter": "South China University of Technology", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/102/795/GCA_024102795.1_ASM2410279v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-06-30", "dateModified": "2022-06-30", "datePublished": "2022-06-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Pirellulaceae bacterium" ], "sample_taxid": [ "2699754" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Changzhou,Jiangsu" ], "sample_host_location_id": [], "data_size": "2.376 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "8557564", "Number of Sequences": "519", "Longest Sequences (bp)": "125016", "N50 (bp)": "25925", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.3", "Number of CDSs": "5612", "Average Protein Length": "388.6", "Coding Ratio (%)": "76.5", "Number of rRNAs": "1", "Number of tRNAs": "109", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Blastopirellula retiformator", "strain": "strain=Enr8", "accession": "GCA_007859755.1", "taxid": 2527970, "species_taxid": 2527970, "relation_to_type": "type", "validated": true, "ani": 76.039, "matched_fragments": 132, "total_fragments": 2580, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bremerella volcania", "strain": "strain=Pan97", "accession": "GCA_007748115.1", "taxid": 2527984, "species_taxid": 2527984, "relation_to_type": "type", "validated": true, "ani": 75.9545, "matched_fragments": 100, "total_fragments": 2580, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Posidoniimonas polymericola", "strain": "strain=Pla123a", "accession": "GCA_007859935.1", "taxid": 2528002, "species_taxid": 2528002, "relation_to_type": "type", "validated": true, "ani": 75.9351, "matched_fragments": 212, "total_fragments": 2580, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rosistilla oblonga", "strain": "strain=CA51", "accession": "GCA_007751715.1", "taxid": 2527990, "species_taxid": 2527990, "relation_to_type": "type", "validated": true, "ani": 75.904, "matched_fragments": 101, "total_fragments": 2580, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudobythopirellula maris", "strain": "strain=Mal64", "accession": "GCA_007859945.1", "taxid": 2527991, "species_taxid": 2527991, "relation_to_type": "type", "validated": true, "ani": 75.8949, "matched_fragments": 163, "total_fragments": 2580, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pirellulimonas nuda", "strain": "strain=Pla175", "accession": "GCA_007750855.1", "taxid": 2528009, "species_taxid": 2528009, "relation_to_type": "type", "validated": true, "ani": 75.8794, "matched_fragments": 195, "total_fragments": 2580, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lacipirellula parvula", "strain": "strain=PX69", "accession": "GCA_009177095.1", "taxid": 2650471, "species_taxid": 2650471, "relation_to_type": "type", "validated": true, "ani": 75.8298, "matched_fragments": 125, "total_fragments": 2580, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Botrimarina hoheduenensis", "strain": "strain=Pla111", "accession": "GCA_007859815.1", "taxid": 2528000, "species_taxid": 2528000, "relation_to_type": "type", "validated": true, "ani": 75.8281, "matched_fragments": 90, "total_fragments": 2580, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lignipirellula cremea", "strain": "strain=Pla85_3_4", "accession": "GCA_007751035.1", "taxid": 2528010, "species_taxid": 2528010, "relation_to_type": "type", "validated": true, "ani": 75.777, "matched_fragments": 249, "total_fragments": 2580, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anatilimnocola aggregata", "strain": "strain=ETA_A8", "accession": "GCA_007747655.1", "taxid": 2528021, "species_taxid": 2528021, "relation_to_type": "type", "validated": true, "ani": 75.7551, "matched_fragments": 123, "total_fragments": 2580, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseimaritima sediminicola", "strain": "strain=JC651", "accession": "GCA_009618275.1", "taxid": 2662066, "species_taxid": 2662066, "relation_to_type": "type", "validated": true, "ani": 75.705, "matched_fragments": 193, "total_fragments": 2580, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Crateriforma conspicua", "strain": "strain=Mal65", "accession": "GCA_007752935.1", "taxid": 2527996, "species_taxid": 2527996, "relation_to_type": "type", "validated": true, "ani": 75.6312, "matched_fragments": 83, "total_fragments": 2580, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Crateriforma spongiae", "strain": "strain=JC647", "accession": "GCA_012290005.1", "taxid": 2724528, "species_taxid": 2724528, "relation_to_type": "type", "validated": true, "ani": 75.5866, "matched_fragments": 81, "total_fragments": 2580, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stieleria neptunia", "strain": "strain=Enr13", "accession": "GCA_007754155.1", "taxid": 2527979, "species_taxid": 2527979, "relation_to_type": "type", "validated": true, "ani": 75.5147, "matched_fragments": 124, "total_fragments": 2580, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rosistilla carotiformis", "strain": "strain=Poly24", "accession": "GCA_007753095.1", "taxid": 2528017, "species_taxid": 2528017, "relation_to_type": "type", "validated": true, "ani": 75.5039, "matched_fragments": 104, "total_fragments": 2580, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stieleria maiorica", "strain": "strain=Mal15", "accession": "GCA_008035925.1", "taxid": 2795974, "species_taxid": 2795974, "relation_to_type": "type", "validated": true, "ani": 75.4943, "matched_fragments": 133, "total_fragments": 2580, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acuticoccus mangrovi", "strain": "strain=B2012", "accession": "GCA_016411865.1", "taxid": 2796142, "species_taxid": 2796142, "relation_to_type": "type", "validated": true, "ani": 74.9531, "matched_fragments": 72, "total_fragments": 2580, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium jeotgali", "strain": "strain=LMG 23639", "accession": "GCA_022179345.1", "taxid": 381630, "species_taxid": 381630, "relation_to_type": "type", "validated": true, "ani": 74.8818, "matched_fragments": 63, "total_fragments": 2580, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Wenxinia marina", "strain": "strain=DSM 24838", "accession": "GCA_000836695.1", "taxid": 390641, "species_taxid": 390641, "relation_to_type": "type", "validated": true, "ani": 74.7097, "matched_fragments": 81, "total_fragments": 2580, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_012729315.1", "gtdb_species": "s__JAAYDI01 sp012729315", "ani": 76.2734, "matched_fragments": 184, "total_fragments": 2580, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__JAAYDI01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003389325.1", "gtdb_species": "s__LB-PLM-3 sp003389325", "ani": 76.1817, "matched_fragments": 242, 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