{
    "type": "genome",
    "identifier": "GCA_024103685.1",
    "organism": "Snodgrassella sp.",
    "title": "Snodgrassella sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "China Agricultural University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_024103685.1",
        "bioproject": "PRJNA705073",
        "biosample": "SAMN18057695",
        "wgs_master": "JAGGIF000000000.1",
        "refseq_category": "na",
        "taxid": "2815304",
        "species_taxid": "2815304",
        "organism_name": "Snodgrassella sp.",
        "infraspecific_name": "",
        "isolate": "S-bin8",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/06/30",
        "asm_name": "ASM2410368v1",
        "submitter": "China Agricultural University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/103/685/GCA_024103685.1_ASM2410368v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-06-30",
    "dateModified": "2022-06-30",
    "datePublished": "2022-06-30",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Snodgrassella sp."
        ],
        "sample_taxid": [
            "2815304"
        ],
        "sample_host_organism": [
            "Bombus terrestris"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Jinan"
        ],
        "sample_host_location_id": [],
        "data_size": "0.654 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2307910",
        "Number of Sequences": "33",
        "Longest Sequences (bp)": "361563",
        "N50 (bp)": "167624",
        "Gap Ratio (%)": "0.017332",
        "GCcontent (%)": "43.0",
        "Number of CDSs": "2065",
        "Average Protein Length": "300.4",
        "Coding Ratio (%)": "80.6",
        "Number of rRNAs": "0",
        "Number of tRNAs": "52",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Snodgrassella communis",
                "strain": "strain=LMG 28360",
                "accession": "GCA_914768045.1",
                "taxid": 2946699,
                "species_taxid": 2946699,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.422,
                "matched_fragments": 684,
                "total_fragments": 752,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Snodgrassella gandavensis",
                "strain": "strain=LMG 30236",
                "accession": "GCA_914768025.1",
                "taxid": 2946698,
                "species_taxid": 2946698,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.4801,
                "matched_fragments": 661,
                "total_fragments": 752,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Snodgrassella alvi",
                "strain": "strain=wkB2",
                "accession": "GCA_000600005.1",
                "taxid": 1196083,
                "species_taxid": 1196083,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.0873,
                "matched_fragments": 518,
                "total_fragments": 752,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Snodgrassella alvi",
                "strain": "strain=wkB2",
                "accession": "GCA_022870965.1",
                "taxid": 1196083,
                "species_taxid": 1196083,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.03,
                "matched_fragments": 525,
                "total_fragments": 752,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Neisseria zoodegmatis",
                "strain": "strain=NCTC12230",
                "accession": "GCA_900187305.1",
                "taxid": 326523,
                "species_taxid": 326523,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0174,
                "matched_fragments": 51,
                "total_fragments": 752,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Stenoxybacter acetivorans",
                "strain": "strain=DSM 19021",
                "accession": "GCA_000745895.1",
                "taxid": 422441,
                "species_taxid": 422441,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5606,
                "matched_fragments": 58,
                "total_fragments": 752,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Neisseria zalophi",
                "strain": "strain=ATCC BAA-2455",
                "accession": "GCA_008807015.1",
                "taxid": 640030,
                "species_taxid": 640030,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4344,
                "matched_fragments": 50,
                "total_fragments": 752,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900094895.1",
                "gtdb_species": "s__Snodgrassella sp900094895",
                "ani": 98.4941,
                "matched_fragments": 681,
                "total_fragments": 752,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Snodgrassella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.52",
                "min_intra_species_ani": "95.92",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 11,
                "status": "conclusive"
            },
            {
                "accession": "GCF_002777425.1",
                "gtdb_species": "s__Snodgrassella alvi_B",
                "ani": 88.7199,
                "matched_fragments": 652,
                "total_fragments": 752,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Snodgrassella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.37",
                "min_intra_species_ani": "97.04",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_002777825.1",
                "gtdb_species": "s__Snodgrassella alvi_C",
                "ani": 87.984,
                "matched_fragments": 655,
                "total_fragments": 752,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Snodgrassella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.79",
                "min_intra_species_ani": "98.79",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002777745.1",
                "gtdb_species": "s__Snodgrassella alvi_D",
                "ani": 85.9388,
                "matched_fragments": 669,
                "total_fragments": 752,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Snodgrassella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.59",
                "min_intra_species_ani": "98.58",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_000600005.1",
                "gtdb_species": "s__Snodgrassella alvi",
                "ani": 81.0873,
                "matched_fragments": 518,
                "total_fragments": 752,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Snodgrassella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.18",
                "min_intra_species_ani": "95.11",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 47,
                "status": "-"
            },
            {
                "accession": "GCF_002777855.1",
                "gtdb_species": "s__Snodgrassella alvi_E",
                "ani": 80.3308,
                "matched_fragments": 456,
                "total_fragments": 752,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Snodgrassella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.27",
                "min_intra_species_ani": "98.21",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_000725195.1",
                "gtdb_species": "s__Snodgrassella alvi_G",
                "ani": 77.9847,
                "matched_fragments": 140,
                "total_fragments": 752,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Snodgrassella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.398,
        "cell_length": 0.0,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": null,
        "genome_size": 2475191.25,
        "gc_content": 42.3,
        "coding_genes": 2238.0,
        "rRNA16S_genes": 4.0,
        "tRNA_genes": 59.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Neisseriaceae",
        "g__Snodgrassella",
        "s__Snodgrassella communis"
    ],
    "_genome_taxon": [
        "Snodgrassella",
        "sp.",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Neisseriaceae",
        "g__Snodgrassella",
        "s__Snodgrassella communis",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Burkholderiales",
        "Neisseriaceae",
        "Snodgrassella",
        "Snodgrassella",
        "communis"
    ],
    "_meo": [
        {
            "id": "MEO_0000468",
            "label": "gut"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}