{
    "type": "genome",
    "identifier": "GCA_024103855.1",
    "organism": "Candidatus Schmidhempelia sp.",
    "title": "Candidatus Schmidhempelia sp.",
    "description": "derived from metagenome; fragmented assembly",
    "data type": "Genome sequencing and assembly",
    "organization": "China Agricultural University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_024103855.1",
        "bioproject": "PRJNA705073",
        "biosample": "SAMN18057691",
        "wgs_master": "JAGGIB000000000.1",
        "refseq_category": "na",
        "taxid": "2815655",
        "species_taxid": "2815655",
        "organism_name": "Candidatus Schmidhempelia sp.",
        "infraspecific_name": "",
        "isolate": "Sch-bin1",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/06/30",
        "asm_name": "ASM2410385v1",
        "submitter": "China Agricultural University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/103/855/GCA_024103855.1_ASM2410385v1",
        "excluded_from_refseq": "derived from metagenome; fragmented assembly",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-06-30",
    "dateModified": "2022-06-30",
    "datePublished": "2022-06-30",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Candidatus Schmidhempelia sp."
        ],
        "sample_taxid": [
            "2815655"
        ],
        "sample_host_organism": [
            "Bombus terrestris"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Jinan"
        ],
        "sample_host_location_id": [],
        "data_size": "0.509 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 55.21,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1765716",
        "Number of Sequences": "422",
        "Longest Sequences (bp)": "28635",
        "N50 (bp)": "5027",
        "Gap Ratio (%)": "0.028883",
        "GCcontent (%)": "34.0",
        "Number of CDSs": "1250",
        "Average Protein Length": "283.4",
        "Coding Ratio (%)": "60.2",
        "Number of rRNAs": "0",
        "Number of tRNAs": "13",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Frischella perrara",
                "strain": "strain=PEB0191",
                "accession": "GCA_000807275.1",
                "taxid": 1267021,
                "species_taxid": 1267021,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8129,
                "matched_fragments": 52,
                "total_fragments": 356,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Frischella perrara",
                "strain": "strain=DSM 104328",
                "accession": "GCA_003182045.1",
                "taxid": 1267021,
                "species_taxid": 1267021,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7773,
                "matched_fragments": 54,
                "total_fragments": 356,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Frischella japonica",
                "strain": "strain=Ac13",
                "accession": "GCA_014489845.1",
                "taxid": 2741544,
                "species_taxid": 2741544,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6031,
                "matched_fragments": 50,
                "total_fragments": 356,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gilliamella apicola",
                "strain": "strain=DSM 104097",
                "accession": "GCA_003201455.1",
                "taxid": 1196095,
                "species_taxid": 1196095,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 76.3181,
                "matched_fragments": 60,
                "total_fragments": 356,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gilliamella apicola",
                "strain": "strain=wkB1",
                "accession": "GCA_000599985.1",
                "taxid": 1196095,
                "species_taxid": 1196095,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 76.2868,
                "matched_fragments": 61,
                "total_fragments": 356,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 55.21,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000471645.3",
                "gtdb_species": "s__Schmidhempelia bombi",
                "ani": 83.4146,
                "matched_fragments": 291,
                "total_fragments": 356,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Schmidhempelia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900103255.1",
                "gtdb_species": "s__Gilliamella bombi",
                "ani": 77.4025,
                "matched_fragments": 64,
                "total_fragments": 356,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.07",
                "min_intra_species_ani": "95.43",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 12,
                "status": "-"
            },
            {
                "accession": "GCF_009795885.1",
                "gtdb_species": "s__Gilliamella sp009795885",
                "ani": 77.1112,
                "matched_fragments": 56,
                "total_fragments": 356,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001690655.1",
                "gtdb_species": "s__Gilliamella apicola_P",
                "ani": 77.0607,
                "matched_fragments": 56,
                "total_fragments": 356,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000807275.1",
                "gtdb_species": "s__Frischella perrara",
                "ani": 76.8129,
                "matched_fragments": 52,
                "total_fragments": 356,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Frischella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.14",
                "min_intra_species_ani": "98.29",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_014489845.1",
                "gtdb_species": "s__Frischella japonica",
                "ani": 76.6031,
                "matched_fragments": 50,
                "total_fragments": 356,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Frischella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001693435.1",
                "gtdb_species": "s__Gilliamella apicola_N",
                "ani": 76.5236,
                "matched_fragments": 61,
                "total_fragments": 356,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.54",
                "min_intra_species_ani": "96.32",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 19,
                "status": "-"
            },
            {
                "accession": "GCF_000599985.1",
                "gtdb_species": "s__Gilliamella apicola",
                "ani": 76.2868,
                "matched_fragments": 61,
                "total_fragments": 356,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.05",
                "min_intra_species_ani": "97.62",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 21,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Enterobacterales",
        "f__Enterobacteriaceae",
        "g__Schmidhempelia",
        "s__"
    ],
    "_genome_taxon": [
        "Candidatus",
        "Schmidhempelia",
        "sp.",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Enterobacterales",
        "f__Enterobacteriaceae",
        "g__Schmidhempelia",
        "s__",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Enterobacterales",
        "Enterobacteriaceae",
        "Schmidhempelia",
        "s",
        "",
        ""
    ],
    "_meo": [
        {
            "id": "MEO_0000468",
            "label": "gut"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}