{
    "type": "genome",
    "identifier": "GCA_024104175.1",
    "organism": "Gilliamella sp.",
    "title": "Gilliamella sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "China Agricultural University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_024104175.1",
        "bioproject": "PRJNA705073",
        "biosample": "SAMN18057679",
        "wgs_master": "JAGGHP000000000.1",
        "refseq_category": "na",
        "taxid": "1891236",
        "species_taxid": "1891236",
        "organism_name": "Gilliamella sp.",
        "infraspecific_name": "",
        "isolate": "G-bin4",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/06/30",
        "asm_name": "ASM2410417v1",
        "submitter": "China Agricultural University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/104/175/GCA_024104175.1_ASM2410417v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-06-30",
    "dateModified": "2022-06-30",
    "datePublished": "2022-06-30",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Gilliamella sp."
        ],
        "sample_taxid": [
            "1891236"
        ],
        "sample_host_organism": [
            "Bombus terrestris"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Jinan"
        ],
        "sample_host_location_id": [],
        "data_size": "0.704 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2492097",
        "Number of Sequences": "66",
        "Longest Sequences (bp)": "115420",
        "N50 (bp)": "58352",
        "Gap Ratio (%)": "0.008427",
        "GCcontent (%)": "34.5",
        "Number of CDSs": "2310",
        "Average Protein Length": "308.6",
        "Coding Ratio (%)": "85.8",
        "Number of rRNAs": "0",
        "Number of tRNAs": "40",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Gilliamella intestini",
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                "accession": "GCA_900094935.1",
                "taxid": 1798183,
                "species_taxid": 1798183,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 585,
                "total_fragments": 798,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gilliamella bombicola",
                "strain": "strain=R-53248",
                "accession": "GCA_900094945.1",
                "taxid": 1798182,
                "species_taxid": 1798182,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.2363,
                "matched_fragments": 578,
                "total_fragments": 798,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gilliamella apicola",
                "strain": "strain=wkB1",
                "accession": "GCA_000599985.1",
                "taxid": 1196095,
                "species_taxid": 1196095,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 80.307,
                "matched_fragments": 458,
                "total_fragments": 798,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gilliamella apicola",
                "strain": "strain=DSM 104097",
                "accession": "GCA_003201455.1",
                "taxid": 1196095,
                "species_taxid": 1196095,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 80.3026,
                "matched_fragments": 446,
                "total_fragments": 798,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gilliamella apis",
                "strain": "strain=NO3",
                "accession": "GCA_002142155.1",
                "taxid": 1970738,
                "species_taxid": 1970738,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.9721,
                "matched_fragments": 402,
                "total_fragments": 798,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900103255.1",
                "gtdb_species": "s__Gilliamella bombi",
                "ani": 98.4166,
                "matched_fragments": 698,
                "total_fragments": 798,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.07",
                "min_intra_species_ani": "95.43",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 12,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001690655.1",
                "gtdb_species": "s__Gilliamella apicola_P",
                "ani": 94.8934,
                "matched_fragments": 608,
                "total_fragments": 798,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900094935.1",
                "gtdb_species": "s__Gilliamella intestini",
                "ani": 89.7911,
                "matched_fragments": 586,
                "total_fragments": 798,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001690595.1",
                "gtdb_species": "s__Gilliamella apicola_M",
                "ani": 89.6717,
                "matched_fragments": 603,
                "total_fragments": 798,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009795845.1",
                "gtdb_species": "s__Gilliamella sp009795845",
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                "matched_fragments": 580,
                "total_fragments": 798,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_001690525.1",
                "gtdb_species": "s__Gilliamella apicola_H",
                "ani": 86.4041,
                "matched_fragments": 617,
                "total_fragments": 798,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.50",
                "min_intra_species_ani": "95.50",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_009795885.1",
                "gtdb_species": "s__Gilliamella sp009795885",
                "ani": 86.3094,
                "matched_fragments": 631,
                "total_fragments": 798,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001690495.1",
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                "ani": 85.9232,
                "matched_fragments": 596,
                "total_fragments": 798,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella",
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                "mean_intra_species_ani": "99.43",
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                "mean_intra_species_af": "0.96",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001690355.1",
                "gtdb_species": "s__Gilliamella apicola_A",
                "ani": 85.8674,
                "matched_fragments": 470,
                "total_fragments": 798,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella",
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                "mean_intra_species_ani": "99.35",
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                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 5,
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            },
            {
                "accession": "GCF_900103085.1",
                "gtdb_species": "s__Gilliamella mensalis",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_900094945.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella",
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                "mean_intra_species_ani": "98.14",
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                "num_clustered_genomes": 3,
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            },
            {
                "accession": "GCF_009795805.1",
                "gtdb_species": "s__Gilliamella sp009795805",
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                "matched_fragments": 623,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella",
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                "mean_intra_species_ani": "98.74",
                "min_intra_species_ani": "98.02",
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                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 5,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": 0.176,
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        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
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        "genome_size": 2569455.19,
        "gc_content": 34.05,
        "coding_genes": 2731.333,
        "rRNA16S_genes": 4.0,
        "tRNA_genes": 52.0,
        "gram_stain": 0.0,
        "sporulation": null,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
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        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
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        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
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        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Enterobacterales",
        "f__Enterobacteriaceae",
        "g__Gilliamella",
        "s__Gilliamella bombi"
    ],
    "_genome_taxon": [
        "Gilliamella",
        "sp.",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Enterobacterales",
        "f__Enterobacteriaceae",
        "g__Gilliamella",
        "s__Gilliamella bombi",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Enterobacterales",
        "Enterobacteriaceae",
        "Gilliamella",
        "Gilliamella",
        "bombi"
    ],
    "_meo": [
        {
            "id": "MEO_0000468",
            "label": "gut"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}