{
    "type": "genome",
    "identifier": "GCA_024226015.1",
    "organism": "Phycisphaeraceae bacterium",
    "title": "Phycisphaeraceae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Kiel University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_024226015.1",
        "bioproject": "PRJNA503328",
        "biosample": "SAMN13632562",
        "wgs_master": "JAAEMB000000000.1",
        "refseq_category": "na",
        "taxid": "2026777",
        "species_taxid": "2026777",
        "organism_name": "Phycisphaeraceae bacterium",
        "infraspecific_name": "",
        "isolate": "Bpl_21",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/07/12",
        "asm_name": "ASM2422601v1",
        "submitter": "Kiel University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/226/015/GCA_024226015.1_ASM2422601v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-07-12",
    "dateModified": "2022-07-12",
    "datePublished": "2022-07-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Phycisphaeraceae bacterium"
        ],
        "sample_taxid": [
            "2026777"
        ],
        "sample_host_organism": [
            "Bolivina plicata"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Peru: Oxygen minimum zone"
        ],
        "sample_host_location_id": [],
        "data_size": "0.910 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 83.71,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3334508",
        "Number of Sequences": "618",
        "Longest Sequences (bp)": "66479",
        "N50 (bp)": "8516",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "66.8",
        "Number of CDSs": "2234",
        "Average Protein Length": "348.0",
        "Coding Ratio (%)": "69.9",
        "Number of rRNAs": "0",
        "Number of tRNAs": "42",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Algisphaera agarilytica",
                "strain": "strain=DSM 103725",
                "accession": "GCA_014207595.1",
                "taxid": 1385975,
                "species_taxid": 1385975,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0009,
                "matched_fragments": 53,
                "total_fragments": 805,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mucisphaera calidilacus",
                "strain": "strain=Pan265",
                "accession": "GCA_007748075.1",
                "taxid": 2527982,
                "species_taxid": 2527982,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9558,
                "matched_fragments": 50,
                "total_fragments": 805,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phycisphaera mikurensis",
                "strain": "strain=NBRC 102666",
                "accession": "GCA_000284115.1",
                "taxid": 547188,
                "species_taxid": 547188,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.4586,
                "matched_fragments": 89,
                "total_fragments": 805,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phycisphaera mikurensis",
                "strain": "strain=DSM 103959",
                "accession": "GCA_014207395.1",
                "taxid": 547188,
                "species_taxid": 547188,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.4478,
                "matched_fragments": 90,
                "total_fragments": 805,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardioides marinisabuli",
                "strain": "strain=DSM 18965",
                "accession": "GCA_013409965.1",
                "taxid": 419476,
                "species_taxid": 419476,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9934,
                "matched_fragments": 51,
                "total_fragments": 805,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardioides marinisabuli",
                "strain": "strain=DSM 18965",
                "accession": "GCA_013466785.1",
                "taxid": 419476,
                "species_taxid": 419476,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9903,
                "matched_fragments": 51,
                "total_fragments": 805,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cellulomonas hominis",
                "strain": "strain=DSM 9581",
                "accession": "GCA_014201095.1",
                "taxid": 156981,
                "species_taxid": 156981,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 74.7152,
                "matched_fragments": 66,
                "total_fragments": 805,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 83.71,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_002684755.1",
                "gtdb_species": "s__UBA12014 sp002684755",
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                "matched_fragments": 603,
                "total_fragments": 805,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Phycisphaerales;f__SM1A02;g__UBA12014",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_002690755.1",
                "gtdb_species": "s__UBA12014 sp002690755",
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                "matched_fragments": 661,
                "total_fragments": 805,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Phycisphaerales;f__SM1A02;g__UBA12014",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.96",
                "min_intra_species_ani": "99.96",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_009936695.1",
                "gtdb_species": "s__UBA12014 sp009936695",
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                "matched_fragments": 517,
                "total_fragments": 805,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Phycisphaerales;f__SM1A02;g__UBA12014",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002683215.1",
                "gtdb_species": "s__UBA12014 sp002683215",
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                "matched_fragments": 543,
                "total_fragments": 805,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Phycisphaerales;f__SM1A02;g__UBA12014",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002684855.1",
                "gtdb_species": "s__UBA12014 sp002684855",
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                "matched_fragments": 488,
                "total_fragments": 805,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Phycisphaerales;f__SM1A02;g__UBA12014",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002167845.2",
                "gtdb_species": "s__UBA12014 sp002167845",
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                "matched_fragments": 397,
                "total_fragments": 805,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Phycisphaerales;f__SM1A02;g__UBA12014",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.48",
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                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_014237965.1",
                "gtdb_species": "s__UBA12014 sp014237965",
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                "matched_fragments": 356,
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                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Phycisphaerales;f__SM1A02;g__UBA12014",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002709295.1",
                "gtdb_species": "s__GCA-002862325 sp002709295",
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                "matched_fragments": 318,
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                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Phycisphaerales;f__SM1A02;g__GCA-002862325",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_905480395.1",
                "gtdb_species": "s__UBA12014 sp905480395",
                "ani": 78.4552,
                "matched_fragments": 274,
                "total_fragments": 805,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Phycisphaerales;f__SM1A02;g__UBA12014",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": 25.0,
        "optimum_ph": null,
        "genome_size": 3884381.5,
        "gc_content": 72.147,
        "coding_genes": 3146.0,
        "rRNA16S_genes": 1.0,
        "tRNA_genes": 46.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
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        "p__Planctomycetota",
        "c__Phycisphaerae",
        "o__Phycisphaerales",
        "f__SM1A02",
        "g__UBA12014",
        "s__UBA12014 sp002684755"
    ],
    "_genome_taxon": [
        "Phycisphaeraceae",
        "bacterium",
        "d__Bacteria",
        "p__Planctomycetota",
        "c__Phycisphaerae",
        "o__Phycisphaerales",
        "f__SM1A02",
        "g__UBA12014",
        "s__UBA12014 sp002684755",
        "Bacteria",
        "Planctomycetota",
        "Phycisphaerae",
        "Phycisphaerales",
        "SM1A02",
        "UBA12014",
        "UBA12014",
        "sp002684755"
    ],
    "_meo": [
        {
            "id": "MEO_0000420",
            "label": "symbiotic microbe"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}