{
    "type": "genome",
    "identifier": "GCA_024229435.1",
    "organism": "Actinomycetia bacterium",
    "title": "Actinomycetia bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Kiel University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_024229435.1",
        "bioproject": "PRJNA503328",
        "biosample": "SAMN13632735",
        "wgs_master": "JAAESK000000000.1",
        "refseq_category": "na",
        "taxid": "1883427",
        "species_taxid": "1883427",
        "organism_name": "Actinomycetia bacterium",
        "infraspecific_name": "",
        "isolate": "Ust_10",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/07/12",
        "asm_name": "ASM2422943v1",
        "submitter": "Kiel University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/229/435/GCA_024229435.1_ASM2422943v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-07-12",
    "dateModified": "2022-07-12",
    "datePublished": "2022-07-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Actinomycetia bacterium"
        ],
        "sample_taxid": [
            "1883427"
        ],
        "sample_host_organism": [
            "Uvigerina striata"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Peru: Oxygen minimum zone"
        ],
        "sample_host_location_id": [],
        "data_size": "0.733 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.55,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2606703",
        "Number of Sequences": "524",
        "Longest Sequences (bp)": "67177",
        "N50 (bp)": "12508",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "65.4",
        "Number of CDSs": "2102",
        "Average Protein Length": "303.8",
        "Coding Ratio (%)": "73.5",
        "Number of rRNAs": "0",
        "Number of tRNAs": "49",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Actinomarinicola tropica",
                "strain": "strain=SCSIO 58843",
                "accession": "GCA_009650215.1",
                "taxid": 2789776,
                "species_taxid": 2789776,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.892,
                "matched_fragments": 98,
                "total_fragments": 629,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhabdothermincola salaria",
                "strain": "strain=EGI L10124",
                "accession": "GCA_021246445.1",
                "taxid": 2903142,
                "species_taxid": 2903142,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6537,
                "matched_fragments": 119,
                "total_fragments": 629,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhabdothermincola sediminis",
                "strain": "strain=SYSU G02662",
                "accession": "GCA_014805525.1",
                "taxid": 2751370,
                "species_taxid": 2751370,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4875,
                "matched_fragments": 72,
                "total_fragments": 629,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ilumatobacter coccineus",
                "strain": "strain=YM16-304",
                "accession": "GCA_000348785.1",
                "taxid": 467094,
                "species_taxid": 467094,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1226,
                "matched_fragments": 56,
                "total_fragments": 629,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ilumatobacter nonamiensis",
                "strain": "strain=YM16-303",
                "accession": "GCA_000350145.1",
                "taxid": 467093,
                "species_taxid": 467093,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1086,
                "matched_fragments": 53,
                "total_fragments": 629,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ilumatobacter fluminis",
                "strain": "strain=DSM 18936",
                "accession": "GCA_004364865.1",
                "taxid": 467091,
                "species_taxid": 467091,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0798,
                "matched_fragments": 67,
                "total_fragments": 629,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desertimonas flava",
                "strain": "strain=SYSU D60003",
                "accession": "GCA_003426815.1",
                "taxid": 2064846,
                "species_taxid": 2064846,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8312,
                "matched_fragments": 78,
                "total_fragments": 629,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 4.55,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_003541675.1",
                "gtdb_species": "s__UBA9410 sp003541675",
                "ani": 98.3888,
                "matched_fragments": 360,
                "total_fragments": 629,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__MedAcidi-G1;g__UBA9410",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_014237715.1",
                "gtdb_species": "s__UBA9410 sp014237715",
                "ani": 94.1999,
                "matched_fragments": 563,
                "total_fragments": 629,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__MedAcidi-G1;g__UBA9410",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.52",
                "min_intra_species_ani": "98.52",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_014239855.1",
                "gtdb_species": "s__UBA9410 sp014239855",
                "ani": 85.4343,
                "matched_fragments": 495,
                "total_fragments": 629,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__MedAcidi-G1;g__UBA9410",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016845305.1",
                "gtdb_species": "s__UBA9410 sp016845305",
                "ani": 81.4499,
                "matched_fragments": 444,
                "total_fragments": 629,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__MedAcidi-G1;g__UBA9410",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002727895.1",
                "gtdb_species": "s__UBA9410 sp002727895",
                "ani": 80.8439,
                "matched_fragments": 300,
                "total_fragments": 629,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__MedAcidi-G1;g__UBA9410",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.12",
                "min_intra_species_ani": "97.12",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_002714485.1",
                "gtdb_species": "s__UBA9410 sp002714485",
                "ani": 80.7498,
                "matched_fragments": 340,
                "total_fragments": 629,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__MedAcidi-G1;g__UBA9410",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_012961035.1",
                "gtdb_species": "s__UBA9410 sp012961035",
                "ani": 79.492,
                "matched_fragments": 334,
                "total_fragments": 629,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__MedAcidi-G1;g__UBA9410",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.67",
                "min_intra_species_ani": "99.67",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_002346745.1",
                "gtdb_species": "s__S20-B6 sp002346745",
                "ani": 78.9729,
                "matched_fragments": 254,
                "total_fragments": 629,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__MedAcidi-G1;g__S20-B6",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.72",
                "min_intra_species_ani": "96.97",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCA_002348705.1",
                "gtdb_species": "s__UBA9410 sp002348705",
                "ani": 77.6725,
                "matched_fragments": 188,
                "total_fragments": 629,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__MedAcidi-G1;g__UBA9410",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.53",
                "min_intra_species_ani": "98.86",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 6,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Acidimicrobiia",
        "o__Acidimicrobiales",
        "f__MedAcidi-G1",
        "g__UBA9410",
        "s__UBA9410 sp003541675"
    ],
    "_genome_taxon": [
        "Actinomycetia",
        "bacterium",
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Acidimicrobiia",
        "o__Acidimicrobiales",
        "f__MedAcidi-G1",
        "g__UBA9410",
        "s__UBA9410 sp003541675",
        "Bacteria",
        "Actinomycetota",
        "Acidimicrobiia",
        "Acidimicrobiales",
        "MedAcidi-G1",
        "UBA9410",
        "UBA9410",
        "sp003541675"
    ],
    "_meo": [
        {
            "id": "MEO_0000040",
            "label": "marine sediment"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}