{ "type": "genome", "identifier": "GCA_024232155.1", "organism": "Aestuariibacter sp.", "title": "Aestuariibacter sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Kiel University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_024232155.1", "bioproject": "PRJNA503328", "biosample": "SAMN13632668", "wgs_master": "JAAEPX000000000.1", "refseq_category": "na", "taxid": "1872400", "species_taxid": "1872400", "organism_name": "Aestuariibacter sp.", "infraspecific_name": "", "isolate": "Gpa_3", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/07/12", "asm_name": "ASM2423215v1", "submitter": "Kiel University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/232/155/GCA_024232155.1_ASM2423215v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-07-12", "dateModified": "2022-07-12", "datePublished": "2022-07-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Aestuariibacter sp." ], "sample_taxid": [ "1872400" ], "sample_host_organism": [ "Globobulimina pacifica" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Peru: Oxygen minimum zone" ], "sample_host_location_id": [], "data_size": "1.649 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 18.51, "strain_heterogeneity": 19.05, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5719088", "Number of Sequences": "399", "Longest Sequences (bp)": "266172", "N50 (bp)": "60949", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "48.5", "Number of CDSs": "5150", "Average Protein Length": "312.3", "Coding Ratio (%)": "84.4", "Number of rRNAs": "0", "Number of tRNAs": "73", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Alteromonas mediterranea", "strain": "strain=DE", "accession": "GCA_000020585.3", "taxid": 314275, "species_taxid": 314275, "relation_to_type": "type", "validated": true, "ani": 81.3664, "matched_fragments": 198, "total_fragments": 1744, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas alba", "strain": "strain=190", "accession": "GCA_002993365.1", "taxid": 2079529, "species_taxid": 2079529, "relation_to_type": "type", "validated": true, "ani": 80.5759, "matched_fragments": 494, "total_fragments": 1744, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas oceani", "strain": "strain=S35", "accession": "GCA_003731635.1", "taxid": 2071609, "species_taxid": 2071609, "relation_to_type": "type", "validated": true, "ani": 79.8595, "matched_fragments": 470, "total_fragments": 1744, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas antoniana", "strain": "strain=MD_567", "accession": "GCA_019249295.1", "taxid": 2803813, "species_taxid": 2803813, "relation_to_type": "type", "validated": true, "ani": 79.605, "matched_fragments": 207, "total_fragments": 1744, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas lipolytica", "strain": "strain=CGMCC 1.15735", "accession": "GCA_014643555.1", "taxid": 1856405, "species_taxid": 1856405, "relation_to_type": "type", "validated": true, "ani": 79.2611, "matched_fragments": 382, "total_fragments": 1744, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas lipolytica", "strain": "strain=JW12", "accession": "GCA_001758465.1", "taxid": 1856405, "species_taxid": 1856405, "relation_to_type": "type", "validated": true, "ani": 79.2162, "matched_fragments": 382, "total_fragments": 1744, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas macleodii", "strain": "strain=ATCC 27126", "accession": "GCA_000172635.2", "taxid": 28108, "species_taxid": 28108, "relation_to_type": "type", "validated": true, "ani": 78.832, "matched_fragments": 155, "total_fragments": 1744, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas abrolhosensis", "strain": "strain=PEL67E", "accession": "GCA_001953635.1", "taxid": 1892904, "species_taxid": 1892904, "relation_to_type": "type", "validated": true, "ani": 78.6751, "matched_fragments": 164, "total_fragments": 1744, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas portus", "strain": "strain=HB161718", "accession": "GCA_005117025.1", "taxid": 2565549, "species_taxid": 2565549, "relation_to_type": "type", "validated": true, "ani": 78.6118, "matched_fragments": 160, "total_fragments": 1744, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas gracilis", "strain": "strain=9a2", "accession": "GCA_002993325.1", "taxid": 1479524, "species_taxid": 1479524, "relation_to_type": "type", "validated": true, "ani": 78.4953, "matched_fragments": 141, "total_fragments": 1744, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraglaciecola mesophila", "strain": "strain=KMM 241", "accession": "GCA_000315015.1", "taxid": 197222, "species_taxid": 197222, "relation_to_type": "type", "validated": true, "ani": 78.4557, "matched_fragments": 88, "total_fragments": 1744, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas confluentis", "strain": "strain=KCTC 42603", "accession": "GCA_001757105.1", "taxid": 1656094, "species_taxid": 1656094, "relation_to_type": "type", "validated": true, "ani": 78.3887, "matched_fragments": 206, "total_fragments": 1744, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 18.51, "strain_heterogeneity": 19.05 }, "gtdb_result": [ { "accession": "GCF_900129565.1", "gtdb_species": "s__Alteromonas aggregata", "ani": 96.5768, "matched_fragments": 1334, "total_fragments": 1744, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Alteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.34", "min_intra_species_ani": "96.39", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.85", "num_clustered_genomes": 11, "status": "conclusive" }, { "accession": "GCA_017794925.1", "gtdb_species": "s__Alteromonas sp017794925", "ani": 87.1547, "matched_fragments": 1045, "total_fragments": 1744, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Alteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006494365.1", "gtdb_species": "s__Alteromonas mangrovi", "ani": 82.283, "matched_fragments": 919, "total_fragments": 1744, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Alteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000020585.3", "gtdb_species": "s__Alteromonas mediterranea", "ani": 81.3773, "matched_fragments": 198, "total_fragments": 1744, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Alteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.15", "min_intra_species_ani": "97.41", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.82", "num_clustered_genomes": 24, "status": "-" }, { "accession": "GCF_002993365.1", "gtdb_species": "s__Alteromonas alba", "ani": 80.5741, "matched_fragments": 496, "total_fragments": 1744, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Alteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003731635.1", "gtdb_species": "s__Alteromonas oceani", "ani": 79.8394, "matched_fragments": 471, "total_fragments": 1744, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Alteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002339125.1", "gtdb_species": "s__Alteromonas sp002335925", "ani": 79.5678, "matched_fragments": 428, "total_fragments": 1744, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Alteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.57", "min_intra_species_ani": "96.36", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.83", "num_clustered_genomes": 19, "status": "-" }, { "accession": "GCA_018222405.1", "gtdb_species": "s__Alteromonas sp018222405", "ani": 79.5083, "matched_fragments": 439, "total_fragments": 1744, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Alteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001758465.1", "gtdb_species": "s__Alteromonas lipolytica", "ani": 79.1921, "matched_fragments": 384, "total_fragments": 1744, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Alteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_013373625.1", "gtdb_species": "s__Alteromonas sp013373625", "ani": 78.747, "matched_fragments": 292, "total_fragments": 1744, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Alteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003429285.1", "gtdb_species": "s__Alteromonas sediminis", "ani": 77.7339, "matched_fragments": 145, "total_fragments": 1744, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Alteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.07", "min_intra_species_ani": "99.07", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.304, "cell_length": 0.127, "doubling_h": null, "growth_tmp": 32.666, "optimum_tmp": 37.5, "optimum_ph": 7.5, "genome_size": 4347449.75, "gc_content": 48.4, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": 1.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Enterobacterales", "f__Alteromonadaceae", "g__Alteromonas", "s__Alteromonas aggregata" ], "_genome_taxon": [ "Aestuariibacter", "sp.", "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Enterobacterales", "f__Alteromonadaceae", "g__Alteromonas", "s__Alteromonas aggregata", "Bacteria", "Pseudomonadota", "Gammaproteobacteria", "Enterobacterales", "Alteromonadaceae", "Alteromonas", "Alteromonas", "aggregata" ], "_meo": [ { "id": "MEO_0000420", "label": "symbiotic microbe" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }