{ "type": "genome", "identifier": "GCA_024233155.1", "organism": "Akkermansiaceae bacterium", "title": "Akkermansiaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "The University of Hong Kong", "publication": [ {} ], "properties": { "assembly_accession": "GCA_024233155.1", "bioproject": "PRJNA648801", "biosample": "SAMN15688096", "wgs_master": "JACKQA000000000.1", "refseq_category": "na", "taxid": "2562705", "species_taxid": "2562705", "organism_name": "Akkermansiaceae bacterium", "infraspecific_name": "", "isolate": "HK-STAS-VERR-8", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/07/12", "asm_name": "ASM2423315v1", "submitter": "The University of Hong Kong", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/233/155/GCA_024233155.1_ASM2423315v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-07-12", "dateModified": "2022-07-12", "datePublished": "2022-07-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Akkermansiaceae bacterium" ], "sample_taxid": [ "2562705" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Hong Kong Special Administrative Region" ], "sample_host_location_id": [], "data_size": "1.235 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 87.5, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4464674", "Number of Sequences": "59", "Longest Sequences (bp)": "635959", "N50 (bp)": "115964", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.0", "Number of CDSs": "3493", "Average Protein Length": "384.1", "Coding Ratio (%)": "90.2", "Number of rRNAs": "6", "Number of tRNAs": "40", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Luteolibacter yonseiensis", "strain": "strain=JCM 18052", "accession": "GCA_016595465.1", "taxid": 1144680, "species_taxid": 1144680, "relation_to_type": "type", "validated": true, "ani": 78.3146, "matched_fragments": 306, "total_fragments": 1455, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteolibacter ambystomatis", "strain": "strain=32A", "accession": "GCA_018137965.1", "taxid": 2824561, "species_taxid": 2824561, "relation_to_type": "type", "validated": true, "ani": 78.0732, "matched_fragments": 301, "total_fragments": 1455, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteolibacter luteus", "strain": "strain=G-1-1-1", "accession": "GCA_012913485.1", "taxid": 2728835, "species_taxid": 2728835, "relation_to_type": "type", "validated": true, "ani": 77.5762, "matched_fragments": 200, "total_fragments": 1455, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haloferula luteola", "strain": "strain=YC6886", "accession": "GCA_014201715.1", "taxid": 595692, "species_taxid": 595692, "relation_to_type": "type", "validated": true, "ani": 77.3361, "matched_fragments": 129, "total_fragments": 1455, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haloferula rosea", "strain": "strain=KCTC 22201", "accession": "GCA_016595525.1", "taxid": 490093, "species_taxid": 490093, "relation_to_type": "type", "validated": true, "ani": 77.3098, "matched_fragments": 171, "total_fragments": 1455, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteolibacter pohnpeiensis", "strain": "strain=KCTC 22041", "accession": "GCA_016595435.1", "taxid": 454153, "species_taxid": 454153, "relation_to_type": "type", "validated": true, "ani": 77.2141, "matched_fragments": 130, "total_fragments": 1455, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfuriroseicoccus oceanibius", "strain": "strain=T37", "accession": "GCA_010681825.2", "taxid": 2707525, "species_taxid": 2707525, "relation_to_type": "type", "validated": true, "ani": 76.9457, "matched_fragments": 65, "total_fragments": 1455, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Akkermansia glycaniphila", "strain": "strain=Pyt", "accession": "GCA_001683795.1", "taxid": 1679444, "species_taxid": 1679444, "relation_to_type": "type", "validated": true, "ani": 75.9746, "matched_fragments": 52, "total_fragments": 1455, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinarimonas rosea", "strain": "strain=DSM 21201", "accession": "GCA_000429045.1", "taxid": 552063, "species_taxid": 552063, "relation_to_type": "type", "validated": true, "ani": 74.7825, "matched_fragments": 86, "total_fragments": 1455, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 87.5, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_003820635.1", "gtdb_species": "s__Luteolibacter sp003820635", "ani": 79.5499, "matched_fragments": 367, "total_fragments": 1455, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae;g__Luteolibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016595465.1", "gtdb_species": "s__Luteolibacter yonseiensis", "ani": 78.2775, "matched_fragments": 303, "total_fragments": 1455, "gtdb_taxonomy": 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Verrucomicrobiota", "c__Verrucomicrobiae", "o__Verrucomicrobiales", "f__Akkermansiaceae", "g__Luteolibacter", "s__Luteolibacter sp024233135" ], "_genome_taxon": [ "Akkermansiaceae", "bacterium", "d__Bacteria", "p__Verrucomicrobiota", "c__Verrucomicrobiae", "o__Verrucomicrobiales", "f__Akkermansiaceae", "g__Luteolibacter", "s__Luteolibacter sp024233135", "Bacteria", "Verrucomicrobiota", "Verrucomicrobiae", "Verrucomicrobiales", "Akkermansiaceae", "Luteolibacter", "Luteolibacter", "sp024233135" ], "_meo": [ { "id": "MEO_0000014", "label": "activated sludge" } ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }