{ "type": "genome", "identifier": "GCA_024236445.1", "organism": "Paracoccaceae bacterium", "title": "Paracoccaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "The University of Hong Kong", "publication": [ {} ], "properties": { "assembly_accession": "GCA_024236445.1", "bioproject": "PRJNA648801", "biosample": "SAMN15687948", "wgs_master": "JACKKK000000000.1", "refseq_category": "na", "taxid": "1904441", "species_taxid": "1904441", "organism_name": "Paracoccaceae bacterium", "infraspecific_name": "", "isolate": "HK-STAS-PROT-63", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/07/12", "asm_name": "ASM2423644v1", "submitter": "The University of Hong Kong", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/236/445/GCA_024236445.1_ASM2423644v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-07-12", "dateModified": "2022-07-12", "datePublished": "2022-07-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Paracoccaceae bacterium" ], "sample_taxid": [ "1904441" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Hong Kong Special Administrative Region" ], "sample_host_location_id": [], "data_size": "0.589 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 75.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2144837", "Number of Sequences": "26", "Longest Sequences (bp)": "744298", "N50 (bp)": "346766", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.2", "Number of CDSs": "2062", "Average Protein Length": "318.2", "Coding Ratio (%)": "91.8", "Number of rRNAs": "0", "Number of tRNAs": "25", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Defluviimonas aquaemixtae", "strain": "strain=CECT 8626", "accession": "GCA_900302475.1", "taxid": 1542388, "species_taxid": 1542388, "relation_to_type": "type", "validated": true, "ani": 79.1264, "matched_fragments": 304, "total_fragments": 703, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinirhodobacter ferrireducens", "strain": "strain=CCTCC AB2012026", "accession": "GCA_004022265.1", "taxid": 1215032, "species_taxid": 1215032, "relation_to_type": "type", "validated": true, "ani": 79.0946, "matched_fragments": 271, "total_fragments": 703, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter changlensis", "strain": "strain=JA139", "accession": "GCA_003034985.1", "taxid": 402884, "species_taxid": 402884, "relation_to_type": "type", "validated": true, "ani": 78.9493, "matched_fragments": 286, "total_fragments": 703, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinirhodobacter hankyongi", "strain": "strain=BO-81", "accession": "GCA_003664585.1", "taxid": 2294033, "species_taxid": 2294033, "relation_to_type": "type", "validated": true, "ani": 78.9139, "matched_fragments": 288, "total_fragments": 703, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phaeovulum vinaykumarii", "strain": "strain=JA123", "accession": "GCA_900217755.1", "taxid": 407234, "species_taxid": 407234, "relation_to_type": "type", "validated": true, "ani": 78.8693, "matched_fragments": 265, "total_fragments": 703, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter amnigenus", "strain": "strain=HSP-20", "accession": "GCA_019130055.1", "taxid": 2852097, "species_taxid": 2852097, "relation_to_type": "type", "validated": true, "ani": 78.8687, "matched_fragments": 273, "total_fragments": 703, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter amnigenus", "strain": "strain=HSP-20", "accession": "GCA_009908265.2", "taxid": 2852097, "species_taxid": 2852097, "relation_to_type": "type", "validated": true, "ani": 78.8621, "matched_fragments": 273, "total_fragments": 703, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter changlensis", "strain": "strain=DSM 18774", "accession": "GCA_003254335.1", "taxid": 402884, "species_taxid": 402884, "relation_to_type": "type", "validated": true, "ani": 78.849, "matched_fragments": 290, "total_fragments": 703, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phaeovulum vinaykumarii", "strain": "strain=DSM 18714", "accession": "GCA_900156695.1", "taxid": 407234, "species_taxid": 407234, "relation_to_type": "type", "validated": true, "ani": 78.8115, "matched_fragments": 268, "total_fragments": 703, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Frigidibacter mobilis", "strain": "strain=cai42", "accession": "GCA_001620265.1", "taxid": 1335048, "species_taxid": 1335048, "relation_to_type": "type", "validated": true, "ani": 78.7943, "matched_fragments": 288, "total_fragments": 703, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Albidovulum inexpectatum", "strain": "strain=DSM 12048", "accession": "GCA_002927635.1", "taxid": 196587, "species_taxid": 196587, "relation_to_type": "type", "validated": true, "ani": 78.774, "matched_fragments": 252, "total_fragments": 703, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter ovatus", "strain": "strain=JA234", "accession": "GCA_900207575.1", "taxid": 439529, "species_taxid": 439529, "relation_to_type": "type", "validated": true, "ani": 78.7245, "matched_fragments": 251, "total_fragments": 703, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter sediminicola", "strain": "strain=JA983", "accession": "GCA_007668225.1", "taxid": 2584941, "species_taxid": 2584941, "relation_to_type": "type", "validated": true, "ani": 78.7088, "matched_fragments": 256, "total_fragments": 703, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus yeei", "strain": "strain=ATCC BAA-599", "accession": "GCA_000622145.1", "taxid": 147645, "species_taxid": 147645, "relation_to_type": "type", "validated": true, "ani": 78.5517, "matched_fragments": 245, "total_fragments": 703, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus salipaludis", "strain": "strain=WN007", "accession": "GCA_002287065.1", "taxid": 2032623, "species_taxid": 2032623, "relation_to_type": "type", "validated": true, "ani": 78.4977, "matched_fragments": 209, 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