{ "type": "genome", "identifier": "GCA_024244705.1", "organism": "Alphaproteobacteria bacterium", "title": "Alphaproteobacteria bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Kiel University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_024244705.1", "bioproject": "PRJNA503328", "biosample": "SAMN13632626", "wgs_master": "JAAEOK000000000.1", "refseq_category": "na", "taxid": "1913988", "species_taxid": "1913988", "organism_name": "Alphaproteobacteria bacterium", "infraspecific_name": "", "isolate": "Cca_5", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/07/12", "asm_name": "ASM2424470v1", "submitter": "Kiel University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/244/705/GCA_024244705.1_ASM2424470v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-07-12", "dateModified": "2022-07-12", "datePublished": "2022-07-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Alphaproteobacteria bacterium" ], "sample_taxid": [ "1913988" ], "sample_host_organism": [ "Cancris carmenensis" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Peru: Oxygen minimum zone" ], "sample_host_location_id": [], "data_size": "1.263 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 20.09, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4506003", "Number of Sequences": "127", "Longest Sequences (bp)": "219440", "N50 (bp)": "131409", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.0", "Number of CDSs": "4209", "Average Protein Length": "313.6", "Coding Ratio (%)": "87.9", "Number of rRNAs": "0", "Number of tRNAs": "65", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Oceanibaculum pacificum", "strain": "strain=MCCC 1A02656", "accession": "GCA_001618175.1", "taxid": 580166, "species_taxid": 580166, "relation_to_type": "type", "validated": true, "ani": 76.3353, "matched_fragments": 140, "total_fragments": 1448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hypericibacter terrae", "strain": "strain=R5913", "accession": "GCA_008728855.1", "taxid": 2602015, "species_taxid": 2602015, "relation_to_type": "type", "validated": true, "ani": 76.3235, "matched_fragments": 177, "total_fragments": 1448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassobaculum fulvum", "strain": "strain=KCTC 42651", "accession": "GCA_014652915.1", "taxid": 1633335, "species_taxid": 1633335, "relation_to_type": "type", "validated": true, "ani": 76.2412, "matched_fragments": 218, "total_fragments": 1448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Magnetospirillum caucaseum", "strain": "strain=SO-1", "accession": "GCA_000342045.1", "taxid": 1244869, "species_taxid": 1244869, "relation_to_type": "type", "validated": true, "ani": 76.1575, "matched_fragments": 122, "total_fragments": 1448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Inquilinus limosus", "strain": "strain=DSM 16000", "accession": "GCA_000423185.1", "taxid": 171674, "species_taxid": 171674, "relation_to_type": "type", "validated": true, "ani": 75.9504, "matched_fragments": 215, "total_fragments": 1448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum oryzae", "strain": "strain=COC8", "accession": "GCA_008364795.1", "taxid": 286727, "species_taxid": 286727, "relation_to_type": "type", "validated": true, "ani": 75.9422, "matched_fragments": 152, "total_fragments": 1448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidiphilium multivorum", "strain": "strain=AIU301", "accession": "GCA_000964345.1", "taxid": 62140, "species_taxid": 62140, "relation_to_type": "type", "validated": true, "ani": 75.8342, "matched_fragments": 112, "total_fragments": 1448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidiphilium multivorum", "strain": "strain=AIU301", "accession": "GCA_000202835.1", "taxid": 62140, "species_taxid": 62140, "relation_to_type": "type", "validated": true, "ani": 75.8278, "matched_fragments": 124, "total_fragments": 1448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum thiophilum", "strain": "strain=BV-S", "accession": "GCA_001305595.1", "taxid": 528244, "species_taxid": 528244, "relation_to_type": "type", "validated": true, "ani": 75.8166, "matched_fragments": 178, "total_fragments": 1448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum thiophilum", "strain": "strain=DSM 21654", "accession": "GCA_000960825.1", "taxid": 528244, "species_taxid": 528244, "relation_to_type": "type", "validated": true, "ani": 75.8027, "matched_fragments": 180, "total_fragments": 1448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum ramasamyi", "strain": "strain=M2T2B2", "accession": "GCA_003233655.1", "taxid": 682998, "species_taxid": 682998, "relation_to_type": "type", "validated": true, "ani": 75.7858, "matched_fragments": 162, "total_fragments": 1448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum agricola", "strain": "strain=CC-HIH038", "accession": "GCA_017876095.1", "taxid": 1720247, "species_taxid": 1720247, "relation_to_type": "type", "validated": true, "ani": 75.7645, "matched_fragments": 195, "total_fragments": 1448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vineibacter terrae", "strain": "strain=CC-CFT640", "accession": "GCA_008039615.1", "taxid": 2586908, "species_taxid": 2586908, "relation_to_type": "type", "validated": true, "ani": 75.7638, "matched_fragments": 190, "total_fragments": 1448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum palustre", "strain": "strain=B2", "accession": "GCA_002573965.1", "taxid": 2044885, "species_taxid": 2044885, "relation_to_type": "type", "validated": true, "ani": 75.7527, "matched_fragments": 194, "total_fragments": 1448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum halopraeferens", "strain": "strain=DSM 3675", "accession": "GCA_000429625.1", "taxid": 34010, "species_taxid": 34010, "relation_to_type": "type", "validated": true, "ani": 75.7328, "matched_fragments": 195, "total_fragments": 1448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum doebereinerae", "strain": "strain=GSF71", "accession": "GCA_003989665.1", "taxid": 92933, "species_taxid": 92933, "relation_to_type": "type", "validated": true, "ani": 75.6644, "matched_fragments": 181, "total_fragments": 1448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limimonas halophila", "strain": "strain=DSM 25584", "accession": "GCA_900100655.1", "taxid": 1082479, "species_taxid": 1082479, "relation_to_type": "type", "validated": true, "ani": 75.644, "matched_fragments": 92, "total_fragments": 1448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium archetypum", "strain": "strain=WSM 1744", "accession": "GCA_013114835.1", "taxid": 2721160, "species_taxid": 2721160, "relation_to_type": "type", "validated": true, "ani": 75.6186, "matched_fragments": 96, "total_fragments": 1448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Telmatospirillum siberiense", "strain": "strain=26-4b1", "accession": "GCA_002845745.1", "taxid": 382514, "species_taxid": 382514, "relation_to_type": "type", "validated": true, "ani": 75.4933, "matched_fragments": 102, "total_fragments": 1448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingosinithalassobacter portus", "strain": "strain=FM6", "accession": "GCA_003171655.1", "taxid": 2676234, "species_taxid": 2676234, "relation_to_type": "type", "validated": true, "ani": 75.4436, "matched_fragments": 57, "total_fragments": 1448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas flavalba", "strain": "strain=ZLT-5", "accession": "GCA_004796535.1", "taxid": 2559804, "species_taxid": 2559804, "relation_to_type": "type", "validated": true, "ani": 75.3922, "matched_fragments": 89, "total_fragments": 1448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Albimonas donghaensis", "strain": "strain=DSM 17890", "accession": "GCA_900106695.1", "taxid": 356660, "species_taxid": 356660, "relation_to_type": "type", "validated": true, "ani": 75.3563, "matched_fragments": 138, "total_fragments": 1448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania thermophila", "strain": "strain=CFH 74456", "accession": "GCA_004153605.1", "taxid": 2509361, "species_taxid": 2509361, "relation_to_type": "type", "validated": true, "ani": 75.2823, "matched_fragments": 55, "total_fragments": 1448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingopyxis terrae subsp. ummariensis", "strain": "strain=DSM 24316", "accession": "GCA_002374275.1", "taxid": 429001, "species_taxid": 33052, "relation_to_type": "type", "validated": true, "ani": 75.2789, "matched_fragments": 75, "total_fragments": 1448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodopseudomonas pentothenatexigens", "strain": "strain=JA575", "accession": "GCA_900218015.1", "taxid": 999699, "species_taxid": 999699, "relation_to_type": "type", "validated": true, "ani": 75.2665, "matched_fragments": 116, "total_fragments": 1448, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 20.09, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_003576685.1", "gtdb_species": "s__SYSU-D60014 sp003576685", "ani": 76.4875, "matched_fragments": 188, "total_fragments": 1448, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Dongiales;f__Dongiaceae;g__SYSU-D60014", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001618175.1", "gtdb_species": "s__Oceanibaculum pacificum", "ani": 76.3353, "matched_fragments": 140, "total_fragments": 1448, "gtdb_taxonomy": 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