{ "type": "genome", "identifier": "GCA_024281135.1", "organism": "Candidatus Eremiobacteria bacterium", "title": "Candidatus Eremiobacteria bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Center for Nuclear Energy in Agriculture - University of Sao Paulo", "publication": [ {} ], "properties": { "assembly_accession": "GCA_024281135.1", "bioproject": "PRJNA842732", "biosample": "SAMN28861729", "wgs_master": "JAMXLG000000000.1", "refseq_category": "na", "taxid": "2860341", "species_taxid": "2860341", "organism_name": "Candidatus Eremiobacteria bacterium", "infraspecific_name": "", "isolate": "Bin.004_Forest", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/07/15", "asm_name": "ASM2428113v1", "submitter": "Center for Nuclear Energy in Agriculture - University of Sao Paulo", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/281/135/GCA_024281135.1_ASM2428113v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-07-15", "dateModified": "2022-07-15", "datePublished": "2022-07-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Candidatus Eremiobacteria bacterium" ], "sample_taxid": [ "2860341" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Brazil: Eastern Amazon" ], "sample_host_location_id": [], "data_size": "1.061 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 4.36, "strain_heterogeneity": 50.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3739922", "Number of Sequences": "442", "Longest Sequences (bp)": "91620", "N50 (bp)": "12707", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.3", "Number of CDSs": "3344", "Average Protein Length": "299.7", "Coding Ratio (%)": "80.4", "Number of rRNAs": "0", "Number of tRNAs": "38", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 91.67, "contamination": 4.36, "strain_heterogeneity": 50.0 }, "gtdb_result": [ { "accession": "GCA_019232905.1", "gtdb_species": "s__Aquilonibacter sp019232905", "ani": 80.7021, "matched_fragments": 529, "total_fragments": 1024, "gtdb_taxonomy": "d__Bacteria;p__Eremiobacterota;c__Eremiobacteria;o__Baltobacterales;f__Baltobacteraceae;g__Aquilonibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_019236975.1", "gtdb_species": "s__JAFAHZ01 sp019236975", "ani": 77.0214, "matched_fragments": 136, "total_fragments": 1024, "gtdb_taxonomy": "d__Bacteria;p__Eremiobacterota;c__Eremiobacteria;o__Baltobacterales;f__Baltobacteraceae;g__JAFAHZ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.54", "min_intra_species_ani": "98.14", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.83", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_003167055.1", "gtdb_species": "s__Aquilonibacter stordalenmirensis", "ani": 76.7387, "matched_fragments": 145, "total_fragments": 1024, "gtdb_taxonomy": "d__Bacteria;p__Eremiobacterota;c__Eremiobacteria;o__Baltobacterales;f__Baltobacteraceae;g__Aquilonibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003133745.1", "gtdb_species": "s__Tyrphobacter aquilonaris", "ani": 76.7044, "matched_fragments": 123, "total_fragments": 1024, "gtdb_taxonomy": "d__Bacteria;p__Eremiobacterota;c__Eremiobacteria;o__Baltobacterales;f__Baltobacteraceae;g__Tyrphobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003151115.1", "gtdb_species": "s__Rubrimentiphilum sp003151115", "ani": 76.6291, "matched_fragments": 95, "total_fragments": 1024, "gtdb_taxonomy": "d__Bacteria;p__Eremiobacterota;c__Eremiobacteria;o__Baltobacterales;f__Baltobacteraceae;g__Rubrimentiphilum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_013036105.1", "gtdb_species": "s__Rubrimentiphilum sp013036105", "ani": 76.62, "matched_fragments": 101, "total_fragments": 1024, "gtdb_taxonomy": "d__Bacteria;p__Eremiobacterota;c__Eremiobacteria;o__Baltobacterales;f__Baltobacteraceae;g__Rubrimentiphilum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_019240755.1", "gtdb_species": "s__Cybelea sp019240755", "ani": 76.5444, "matched_fragments": 89, "total_fragments": 1024, "gtdb_taxonomy": "d__Bacteria;p__Eremiobacterota;c__Eremiobacteria;o__Baltobacterales;f__Baltobacteraceae;g__Cybelea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.35", "min_intra_species_ani": "99.34", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.89", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_013044185.1", "gtdb_species": "s__JABEUX01 sp013044185", "ani": 76.4422, "matched_fragments": 72, "total_fragments": 1024, "gtdb_taxonomy": "d__Bacteria;p__Eremiobacterota;c__Eremiobacteria;o__Baltobacterales;f__Baltobacteraceae;g__JABEUX01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_019247395.1", "gtdb_species": "s__Cybelea sp019247395", "ani": 76.2895, "matched_fragments": 56, "total_fragments": 1024, "gtdb_taxonomy": "d__Bacteria;p__Eremiobacterota;c__Eremiobacteria;o__Baltobacterales;f__Baltobacteraceae;g__Cybelea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_019237435.1", "gtdb_species": "s__Cybelea sp019237435", "ani": 76.2785, "matched_fragments": 57, "total_fragments": 1024, "gtdb_taxonomy": "d__Bacteria;p__Eremiobacterota;c__Eremiobacteria;o__Baltobacterales;f__Baltobacteraceae;g__Cybelea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003140855.1", "gtdb_species": "s__Rubrimentiphilum sp003140855", "ani": 76.2327, "matched_fragments": 80, "total_fragments": 1024, "gtdb_taxonomy": "d__Bacteria;p__Eremiobacterota;c__Eremiobacteria;o__Baltobacterales;f__Baltobacteraceae;g__Rubrimentiphilum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003140835.1", "gtdb_species": "s__Tumulicola scandinaviensis", "ani": 76.1498, "matched_fragments": 113, "total_fragments": 1024, "gtdb_taxonomy": "d__Bacteria;p__Eremiobacterota;c__Eremiobacteria;o__Baltobacterales;f__Baltobacteraceae;g__Tumulicola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003136355.1", "gtdb_species": "s__Rubrimentiphilum sp003136355", "ani": 76.012, "matched_fragments": 77, "total_fragments": 1024, "gtdb_taxonomy": "d__Bacteria;p__Eremiobacterota;c__Eremiobacteria;o__Baltobacterales;f__Baltobacteraceae;g__Rubrimentiphilum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.58", "min_intra_species_ani": "98.49", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.81", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_013036315.1", "gtdb_species": "s__Rubrimentiphilum sp013036315", "ani": 76.0035, "matched_fragments": 57, "total_fragments": 1024, "gtdb_taxonomy": "d__Bacteria;p__Eremiobacterota;c__Eremiobacteria;o__Baltobacterales;f__Baltobacteraceae;g__Rubrimentiphilum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_019236495.1", "gtdb_species": "s__JAFAIW01 sp019236495", "ani": 75.9442, "matched_fragments": 62, "total_fragments": 1024, "gtdb_taxonomy": "d__Bacteria;p__Eremiobacterota;c__Eremiobacteria;o__Baltobacterales;f__Baltobacteraceae;g__JAFAIW01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_019233415.1", "gtdb_species": "s__Elarobacter sp019233415", "ani": 75.9367, "matched_fragments": 69, "total_fragments": 1024, "gtdb_taxonomy": "d__Bacteria;p__Eremiobacterota;c__Eremiobacteria;o__Baltobacterales;f__Baltobacteraceae;g__Elarobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Eremiobacterota", "c__Eremiobacteria", "o__Baltobacterales", "f__Baltobacteraceae", "g__JAMXLG01", "s__JAMXLG01 sp024281135" ], "_genome_taxon": [ "Candidatus", "Eremiobacteria", "bacterium", "d__Bacteria", "p__Eremiobacterota", "c__Eremiobacteria", "o__Baltobacterales", "f__Baltobacteraceae", "g__JAMXLG01", "s__JAMXLG01 sp024281135", "Bacteria", "Eremiobacterota", "Eremiobacteria", "Baltobacterales", "Baltobacteraceae", "JAMXLG01", "JAMXLG01", "sp024281135" ], "_meo": [ { "id": "MEO_0000007", "label": "soil" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }