{
    "type": "genome",
    "identifier": "GCA_024281695.1",
    "organism": "Nitrosomonas sp.",
    "title": "Nitrosomonas sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Northeastern University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_024281695.1",
        "bioproject": "PRJNA846349",
        "biosample": "SAMN28968182",
        "wgs_master": "JAMXAE000000000.1",
        "refseq_category": "na",
        "taxid": "42353",
        "species_taxid": "42353",
        "organism_name": "Nitrosomonas sp.",
        "infraspecific_name": "",
        "isolate": "NEU_AOB_2",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/07/15",
        "asm_name": "ASM2428169v1",
        "submitter": "Northeastern University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/281/695/GCA_024281695.1_ASM2428169v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-07-15",
    "dateModified": "2022-07-15",
    "datePublished": "2022-07-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Nitrosomonas sp."
        ],
        "sample_taxid": [
            "42353"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: North Carolina"
        ],
        "sample_host_location_id": [],
        "data_size": "0.862 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 97.22,
        "contamination": 9.72,
        "strain_heterogeneity": 85.71,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2999414",
        "Number of Sequences": "229",
        "Longest Sequences (bp)": "68353",
        "N50 (bp)": "16542",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "43.5",
        "Number of CDSs": "2577",
        "Average Protein Length": "303.1",
        "Coding Ratio (%)": "78.1",
        "Number of rRNAs": "1",
        "Number of tRNAs": "20",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Nitrosomonas oligotropha",
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                "accession": "GCA_009833085.1",
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                "species_taxid": 42354,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 261,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nitrosomonas ureae",
                "strain": "strain=Nm10",
                "accession": "GCA_900105875.1",
                "taxid": 44577,
                "species_taxid": 44577,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7511,
                "matched_fragments": 222,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nitrosomonas ureae",
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                "accession": "GCA_001455205.1",
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                "relation_to_type": "type",
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                "ani": 77.7362,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nitrosomonas supralitoralis",
                "strain": "strain=APG5",
                "accession": "GCA_003011925.2",
                "taxid": 2116706,
                "species_taxid": 2116706,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0547,
                "matched_fragments": 207,
                "total_fragments": 882,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nitrosomonas nitrosa",
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                "accession": "GCA_003051105.1",
                "taxid": 52442,
                "species_taxid": 52442,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3128,
                "matched_fragments": 55,
                "total_fragments": 882,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nitrosomonas aestuarii",
                "strain": "strain=Nm36",
                "accession": "GCA_003046585.1",
                "taxid": 52441,
                "species_taxid": 52441,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1729,
                "matched_fragments": 75,
                "total_fragments": 882,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 97.22,
            "contamination": 9.72,
            "strain_heterogeneity": 85.71
        },
        "gtdb_result": [
            {
                "accession": "GCA_017994575.1",
                "gtdb_species": "s__Nitrosomonas sp017994575",
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                "matched_fragments": 383,
                "total_fragments": 882,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Nitrosomonadaceae;g__Nitrosomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.80",
                "min_intra_species_ani": "99.80",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_902826115.1",
                "gtdb_species": "s__Nitrosomonas sp902826115",
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                "total_fragments": 882,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Nitrosomonadaceae;g__Nitrosomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.11",
                "min_intra_species_ani": "98.94",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_016708955.1",
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                "matched_fragments": 356,
                "total_fragments": 882,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Nitrosomonadaceae;g__Nitrosomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000219585.1",
                "gtdb_species": "s__Nitrosomonas sp000219585",
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                "matched_fragments": 400,
                "total_fragments": 882,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Nitrosomonadaceae;g__Nitrosomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016721865.1",
                "gtdb_species": "s__Nitrosomonas sp016721865",
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                "total_fragments": 882,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Nitrosomonadaceae;g__Nitrosomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_003201565.1",
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                "total_fragments": 882,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Nitrosomonadaceae;g__Nitrosomonas",
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                "mean_intra_species_ani": "100.00",
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                "min_intra_species_af": "0.99",
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            },
            {
                "accession": "GCA_017984435.1",
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            },
            {
                "accession": "GCF_900112825.1",
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                "matched_fragments": 311,
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_902826915.1",
                "gtdb_species": "s__Nitrosomonas sp902826915",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.016,
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        "coding_genes": 2822.875,
        "rRNA16S_genes": 1.0,
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        "sporulation": 0.0,
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        "range_salinity": null,
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        "bacillus_cell_shape": 0.0,
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        "coccobacillus_cell_shape": 1.0,
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    "_gtdb_taxon": [
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        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
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        "f__Nitrosomonadaceae",
        "g__Nitrosomonas",
        "s__Nitrosomonas sp024281695"
    ],
    "_genome_taxon": [
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        "sp.",
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        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Nitrosomonadaceae",
        "g__Nitrosomonas",
        "s__Nitrosomonas sp024281695",
        "Bacteria",
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        "Burkholderiales",
        "Nitrosomonadaceae",
        "Nitrosomonas",
        "Nitrosomonas",
        "sp024281695"
    ],
    "_meo": [
        {
            "id": "MEO_0000014",
            "label": "activated sludge"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}