{
    "type": "genome",
    "identifier": "GCA_024281765.1",
    "organism": "Nitrosomonas sp.",
    "title": "Nitrosomonas sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Northeastern University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_024281765.1",
        "bioproject": "PRJNA846349",
        "biosample": "SAMN28968181",
        "wgs_master": "JAMXAD000000000.1",
        "refseq_category": "na",
        "taxid": "42353",
        "species_taxid": "42353",
        "organism_name": "Nitrosomonas sp.",
        "infraspecific_name": "",
        "isolate": "NEU_AOB_1",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/07/15",
        "asm_name": "ASM2428176v1",
        "submitter": "Northeastern University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/281/765/GCA_024281765.1_ASM2428176v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-07-15",
    "dateModified": "2022-07-15",
    "datePublished": "2022-07-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Nitrosomonas sp."
        ],
        "sample_taxid": [
            "42353"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: North Carolina"
        ],
        "sample_host_location_id": [],
        "data_size": "0.765 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2675798",
        "Number of Sequences": "39",
        "Longest Sequences (bp)": "353161",
        "N50 (bp)": "107875",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "48.8",
        "Number of CDSs": "2345",
        "Average Protein Length": "331.9",
        "Coding Ratio (%)": "87.3",
        "Number of rRNAs": "0",
        "Number of tRNAs": "32",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Nitrosomonas oligotropha",
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                "accession": "GCA_009833085.1",
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                "species_taxid": 42354,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 211,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nitrosomonas ureae",
                "strain": "strain=Nm10",
                "accession": "GCA_900105875.1",
                "taxid": 44577,
                "species_taxid": 44577,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2408,
                "matched_fragments": 139,
                "total_fragments": 868,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nitrosomonas ureae",
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                "accession": "GCA_001455205.1",
                "taxid": 44577,
                "species_taxid": 44577,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1179,
                "matched_fragments": 148,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nitrosomonas aestuarii",
                "strain": "strain=Nm36",
                "accession": "GCA_003046585.1",
                "taxid": 52441,
                "species_taxid": 52441,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6979,
                "matched_fragments": 55,
                "total_fragments": 868,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nitrosomonas supralitoralis",
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                "accession": "GCA_003011925.2",
                "taxid": 2116706,
                "species_taxid": 2116706,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5203,
                "matched_fragments": 116,
                "total_fragments": 868,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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                "accession": "GCA_017879645.1",
                "gtdb_species": "s__Nitrosomonas sp017879645",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Nitrosomonadaceae;g__Nitrosomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
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            {
                "accession": "GCA_015709635.1",
                "gtdb_species": "s__Nitrosomonas sp015709635",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Nitrosomonadaceae;g__Nitrosomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.39",
                "min_intra_species_ani": "95.39",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_018241205.1",
                "gtdb_species": "s__Nitrosomonas sp018241205",
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                "matched_fragments": 190,
                "total_fragments": 868,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Nitrosomonadaceae;g__Nitrosomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009833095.1",
                "gtdb_species": "s__Nitrosomonas sp009833095",
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                "matched_fragments": 199,
                "total_fragments": 868,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Nitrosomonadaceae;g__Nitrosomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.87",
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                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_018240285.1",
                "gtdb_species": "s__Nitrosomonas sp018240285",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Nitrosomonadaceae;g__Nitrosomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.27",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_015709615.1",
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                "total_fragments": 868,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Nitrosomonadaceae;g__Nitrosomonas",
                "ani_circumscription_radius": 95.0,
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                "num_clustered_genomes": 2,
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            },
            {
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                "mean_intra_species_ani": "96.13",
                "min_intra_species_ani": "95.07",
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                "num_clustered_genomes": 7,
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            },
            {
                "accession": "GCF_003201565.1",
                "gtdb_species": "s__Nitrosomonas sp003201565",
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                "total_fragments": 868,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Nitrosomonadaceae;g__Nitrosomonas",
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            },
            {
                "accession": "GCA_902826055.1",
                "gtdb_species": "s__Nitrosomonas sp902826055",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Nitrosomonadaceae;g__Nitrosomonas",
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                "mean_intra_species_ani": "N/A",
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            },
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                "accession": "GCF_004345375.1",
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            },
            {
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            {
                "accession": "GCA_005779435.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Nitrosomonadaceae;g__Nitrosomonas",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.016,
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        "rRNA16S_genes": 1.0,
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        "bacillus_cell_shape": 0.0,
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        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 1.0,
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    "_gtdb_taxon": [
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        "p__Pseudomonadota",
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        "g__Nitrosomonas",
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    ],
    "_genome_taxon": [
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        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
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        "f__Nitrosomonadaceae",
        "g__Nitrosomonas",
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        "Bacteria",
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        "Gammaproteobacteria",
        "Burkholderiales",
        "Nitrosomonadaceae",
        "Nitrosomonas",
        "Nitrosomonas",
        "sp017879645"
    ],
    "_meo": [
        {
            "id": "MEO_0000014",
            "label": "activated sludge"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}