{ "type": "genome", "identifier": "GCA_024305175.1", "organism": "Flavobacterium sp.", "title": "Flavobacterium sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Lawrence Livermore National Laboratory", "publication": [ {} ], "properties": { "assembly_accession": "GCA_024305175.1", "bioproject": "PRJNA844373", "biosample": "SAMN28816669", "wgs_master": "JAMWYY000000000.1", "refseq_category": "na", "taxid": "239", "species_taxid": "239", "organism_name": "Flavobacterium sp.", "infraspecific_name": "", "isolate": "MSM5", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/07/18", "asm_name": "ASM2430517v1", "submitter": "Lawrence Livermore National Laboratory", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/305/175/GCA_024305175.1_ASM2430517v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-07-18", "dateModified": "2022-07-18", "datePublished": "2022-07-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium sp." ], "sample_taxid": [ "239" ], "sample_host_organism": [ "Microchloropsis salina" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Livermore, CA" ], "sample_host_location_id": [], "data_size": "0.910 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3207295", "Number of Sequences": "112", "Longest Sequences (bp)": "132161", "N50 (bp)": "48031", "Gap Ratio (%)": "0.017460", "GCcontent (%)": "41.0", "Number of CDSs": "2891", "Average Protein Length": "332.6", "Coding Ratio (%)": "89.9", "Number of rRNAs": "0", "Number of tRNAs": "37", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium coralii", "strain": "strain=D11R37", "accession": "GCA_019891545.1", "taxid": 2838017, "species_taxid": 2838017, "relation_to_type": "type", "validated": true, "ani": 91.8546, "matched_fragments": 893, "total_fragments": 1011, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium salilacus subsp. salilacus", "strain": "strain=SaA2.12", "accession": "GCA_004634195.1", "taxid": 2545633, "species_taxid": 2898423, "relation_to_type": "type", "validated": true, "ani": 78.459, "matched_fragments": 424, "total_fragments": 1011, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium salilacus subsp. altitudinum", "strain": "strain=LaA7.5", "accession": "GCA_010078225.1", "taxid": 2691899, "species_taxid": 2898423, "relation_to_type": "type", "validated": true, "ani": 78.4564, "matched_fragments": 432, "total_fragments": 1011, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium subsaxonicum", "strain": "strain=WB 4.1-42", "accession": "GCA_000769935.1", "taxid": 426226, "species_taxid": 426226, "relation_to_type": "type", "validated": true, "ani": 78.081, "matched_fragments": 319, "total_fragments": 1011, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium subsaxonicum", "strain": "strain=DSM 21790", "accession": "GCA_000422725.1", "taxid": 426226, "species_taxid": 426226, "relation_to_type": "type", "validated": true, "ani": 78.0549, "matched_fragments": 326, "total_fragments": 1011, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium akiainvivens", "strain": "strain=DSM 25510", "accession": "GCA_900115875.1", "taxid": 1202724, "species_taxid": 1202724, "relation_to_type": "type", "validated": true, "ani": 78.004, "matched_fragments": 306, "total_fragments": 1011, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium zepuense", "strain": "strain=ZT4R6", "accession": "GCA_007097145.1", "taxid": 2593302, "species_taxid": 2593302, "relation_to_type": "type", "validated": true, "ani": 77.9963, "matched_fragments": 322, "total_fragments": 1011, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium akiainvivens", "strain": "strain=IK-1", "accession": "GCA_001278115.1", "taxid": 1202724, "species_taxid": 1202724, "relation_to_type": "type", "validated": true, "ani": 77.9723, "matched_fragments": 301, "total_fragments": 1011, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium rivuli", "strain": "strain=WB 3.3-2", "accession": "GCA_000769825.1", "taxid": 498301, "species_taxid": 498301, "relation_to_type": "type", "validated": true, "ani": 77.9258, "matched_fragments": 293, "total_fragments": 1011, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium cyanobacteriorum", "strain": "strain=TH021", "accession": "GCA_002251835.1", "taxid": 2022802, "species_taxid": 2022802, "relation_to_type": "type", "validated": true, "ani": 77.9023, "matched_fragments": 262, "total_fragments": 1011, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium suaedae", "strain": "strain=CGMCC 1.15461", "accession": "GCA_014642915.1", "taxid": 1767027, "species_taxid": 1767027, "relation_to_type": "type", "validated": true, "ani": 77.818, "matched_fragments": 337, "total_fragments": 1011, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium beibuense", "strain": "strain=F44-8", "accession": "GCA_000769915.1", "taxid": 657326, "species_taxid": 657326, "relation_to_type": "type", "validated": true, "ani": 77.7424, "matched_fragments": 249, "total_fragments": 1011, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium alkalisoli", "strain": "strain=XS-5", "accession": "GCA_008000935.1", "taxid": 2602769, "species_taxid": 2602769, "relation_to_type": "type", "validated": true, "ani": 77.6267, "matched_fragments": 302, "total_fragments": 1011, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium rakeshii", "strain": "strain=JCM 17928", "accession": "GCA_009741375.1", "taxid": 1038845, "species_taxid": 1038845, "relation_to_type": "type", "validated": true, "ani": 77.6218, "matched_fragments": 282, "total_fragments": 1011, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_002714575.1", "gtdb_species": "s__Flavobacterium sp002714575", "ani": 91.9756, "matched_fragments": 903, "total_fragments": 1011, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009848495.1", "gtdb_species": "s__Flavobacterium sp009848495", "ani": 78.8569, "matched_fragments": 395, "total_fragments": 1011, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004634195.1", "gtdb_species": "s__Flavobacterium sp004634195", "ani": 78.4601, "matched_fragments": 425, "total_fragments": 1011, 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