{ "type": "genome", "identifier": "GCA_024399175.1", "organism": "archaeon", "title": "archaeon", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "INRA", "publication": [ {} ], "properties": { "assembly_accession": "GCA_024399175.1", "bioproject": "PRJNA438436", "biosample": "SAMN24147938", "wgs_master": "JAKSHU000000000.1", "refseq_category": "na", "taxid": "1906665", "species_taxid": "1906665", "organism_name": "archaeon", "infraspecific_name": "", "isolate": "Horse_feces3", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/07/25", "asm_name": "ASM2439917v1", "submitter": "INRA", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/399/175/GCA_024399175.1_ASM2439917v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-07-25", "dateModified": "2022-07-25", "datePublished": "2022-07-25", "_annotation": { "sample_count": 1, "sample_organism": [ "archaeon" ], "sample_taxid": [ "1906665" ], "sample_host_organism": [ "Equus caballus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France: Fontainebleau" ], "sample_host_location_id": [], "data_size": "0.442 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 54.43, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1566528", "Number of Sequences": "187", "Longest Sequences (bp)": "43602", "N50 (bp)": "10248", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.9", "Number of CDSs": "1371", "Average Protein Length": "303.3", "Coding Ratio (%)": "79.6", "Number of rRNAs": "3", "Number of tRNAs": "27", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 54.43, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_902787415.1", "gtdb_species": "s__Methanomethylophilus sp902787415", "ani": 81.5912, "matched_fragments": 184, "total_fragments": 424, "gtdb_taxonomy": "d__Archaea;p__Thermoplasmatota;c__Thermoplasmata;o__Methanomassiliicoccales;f__Methanomethylophilaceae;g__Methanomethylophilus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.47", "min_intra_species_ani": "96.90", "mean_intra_species_af": "0.79", "min_intra_species_af": "0.76", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_001560915.1", "gtdb_species": "s__Methanomethylophilus sp001560915", "ani": 80.7852, "matched_fragments": 197, "total_fragments": 424, "gtdb_taxonomy": "d__Archaea;p__Thermoplasmatota;c__Thermoplasmata;o__Methanomassiliicoccales;f__Methanomethylophilaceae;g__Methanomethylophilus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.94", "min_intra_species_ani": "96.83", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_902763685.1", "gtdb_species": "s__Methanomethylophilus sp902763685", "ani": 80.5679, "matched_fragments": 190, "total_fragments": 424, "gtdb_taxonomy": "d__Archaea;p__Thermoplasmatota;c__Thermoplasmata;o__Methanomassiliicoccales;f__Methanomethylophilaceae;g__Methanomethylophilus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000300255.2", "gtdb_species": "s__Methanomethylophilus alvus", "ani": 78.1648, "matched_fragments": 130, "total_fragments": 424, "gtdb_taxonomy": "d__Archaea;p__Thermoplasmatota;c__Thermoplasmata;o__Methanomassiliicoccales;f__Methanomethylophilaceae;g__Methanomethylophilus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.45", "min_intra_species_ani": "99.02", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.92", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCA_002503545.1", "gtdb_species": "s__Methanomethylophilus sp002503545", "ani": 77.5956, "matched_fragments": 116, "total_fragments": 424, "gtdb_taxonomy": "d__Archaea;p__Thermoplasmatota;c__Thermoplasmata;o__Methanomassiliicoccales;f__Methanomethylophilaceae;g__Methanomethylophilus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016296195.1", "gtdb_species": "s__UBA71 sp016296195", "ani": 77.3937, "matched_fragments": 74, "total_fragments": 424, "gtdb_taxonomy": "d__Archaea;p__Thermoplasmatota;c__Thermoplasmata;o__Methanomassiliicoccales;f__Methanomethylophilaceae;g__UBA71", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900767505.1", "gtdb_species": "s__UBA71 sp900767505", "ani": 76.7549, "matched_fragments": 54, "total_fragments": 424, "gtdb_taxonomy": "d__Archaea;p__Thermoplasmatota;c__Thermoplasmata;o__Methanomassiliicoccales;f__Methanomethylophilaceae;g__UBA71", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017519045.1", "gtdb_species": "s__UBA71 sp017519045", "ani": 76.3953, "matched_fragments": 56, "total_fragments": 424, "gtdb_taxonomy": "d__Archaea;p__Thermoplasmatota;c__Thermoplasmata;o__Methanomassiliicoccales;f__Methanomethylophilaceae;g__UBA71", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.48", "min_intra_species_ani": "98.48", "mean_intra_species_af": "0.77", "min_intra_species_af": "0.77", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Archaea", "p__Thermoplasmatota", "c__Thermoplasmata", "o__Methanomassiliicoccales", "f__Methanomethylophilaceae", "g__Methanomethylophilus", "s__Methanomethylophilus sp024399175" ], "_genome_taxon": [ "archaeon", "d__Archaea", "p__Thermoplasmatota", "c__Thermoplasmata", "o__Methanomassiliicoccales", "f__Methanomethylophilaceae", "g__Methanomethylophilus", "s__Methanomethylophilus sp024399175", "Archaea", "Thermoplasmatota", "Thermoplasmata", "Methanomassiliicoccales", "Methanomethylophilaceae", "Methanomethylophilus", "Methanomethylophilus", "sp024399175" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }