{ "type": "genome", "identifier": "GCA_024402115.1", "organism": "Bacteroidales bacterium", "title": "Bacteroidales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "INRA", "publication": [ {} ], "properties": { "assembly_accession": "GCA_024402115.1", "bioproject": "PRJNA438436", "biosample": "SAMN24147986", "wgs_master": "JAKSJQ000000000.1", "refseq_category": "na", "taxid": "2030927", "species_taxid": "2030927", "organism_name": "Bacteroidales bacterium", "infraspecific_name": "", "isolate": "Horse_feces51", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/07/25", "asm_name": "ASM2440211v1", "submitter": "INRA", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/402/115/GCA_024402115.1_ASM2440211v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-07-25", "dateModified": "2022-07-25", "datePublished": "2022-07-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Bacteroidales bacterium" ], "sample_taxid": [ "2030927" ], "sample_host_organism": [ "Equus caballus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France: Fontainebleau" ], "sample_host_location_id": [], "data_size": "0.629 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 57.72, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2201501", "Number of Sequences": "83", "Longest Sequences (bp)": "174482", "N50 (bp)": "40412", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "53.5", "Number of CDSs": "1695", "Average Protein Length": "385.4", "Coding Ratio (%)": "89.0", "Number of rRNAs": "0", "Number of tRNAs": "21", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 57.72, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_018064725.1", "gtdb_species": "s__Cryptobacteroides sp018064725", "ani": 86.5677, "matched_fragments": 483, "total_fragments": 687, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Cryptobacteroides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002314885.1", "gtdb_species": "s__Cryptobacteroides sp002314885", "ani": 78.2944, "matched_fragments": 151, "total_fragments": 687, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Cryptobacteroides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016293535.1", "gtdb_species": "s__Cryptobacteroides sp016293535", "ani": 77.5123, "matched_fragments": 122, "total_fragments": 687, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Cryptobacteroides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017938925.1", "gtdb_species": "s__Cryptobacteroides sp017938925", "ani": 77.5006, "matched_fragments": 72, "total_fragments": 687, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Cryptobacteroides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.18", "min_intra_species_ani": "96.33", "mean_intra_species_af": "0.77", "min_intra_species_af": "0.70", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_004554455.1", "gtdb_species": "s__Cryptobacteroides sp004554455", "ani": 77.4395, "matched_fragments": 83, "total_fragments": 687, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Cryptobacteroides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.35", "min_intra_species_ani": "97.49", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.75", "num_clustered_genomes": 12, "status": "-" }, { "accession": "GCA_017452265.1", "gtdb_species": "s__Cryptobacteroides sp017452265", "ani": 77.3078, "matched_fragments": 59, "total_fragments": 687, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Cryptobacteroides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017415715.1", "gtdb_species": "s__Cryptobacteroides sp017415715", "ani": 77.2506, "matched_fragments": 84, "total_fragments": 687, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Cryptobacteroides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017561265.1", "gtdb_species": "s__Cryptobacteroides sp017561265", "ani": 77.2058, "matched_fragments": 61, "total_fragments": 687, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Cryptobacteroides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017461285.1", "gtdb_species": "s__Cryptobacteroides sp017461285", "ani": 77.1331, "matched_fragments": 81, "total_fragments": 687, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Cryptobacteroides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_015060325.1", "gtdb_species": "s__Cryptobacteroides sp015060325", "ani": 77.0972, "matched_fragments": 63, "total_fragments": 687, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Cryptobacteroides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017549505.1", "gtdb_species": "s__Cryptobacteroides sp017549505", "ani": 77.0074, "matched_fragments": 79, "total_fragments": 687, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Cryptobacteroides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017399865.1", "gtdb_species": "s__Cryptobacteroides sp017399865", "ani": 76.7618, "matched_fragments": 65, "total_fragments": 687, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Cryptobacteroides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017556765.1", "gtdb_species": "s__Cryptobacteroides sp017556765", "ani": 76.5895, "matched_fragments": 74, "total_fragments": 687, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Cryptobacteroides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.217, "cell_length": 0.157, "doubling_h": 0.206, "growth_tmp": 36.585, "optimum_tmp": 36.041, "optimum_ph": 7.086, "genome_size": 3658719.825, "gc_content": 44.947, "coding_genes": 3043.648, "rRNA16S_genes": 4.032, "tRNA_genes": 57.661, "gram_stain": 0.014, "sporulation": 0.0, "motility": 0.04, "range_salinity": 0.0, "facultative_respiration": 0.006, "anaerobic_respiration": 0.958, "aerobic_respiration": 0.034, "mesophilic_range_tmp": 0.985, "thermophilic_range_tmp": 0.014, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.95, "coccus_cell_shape": 0.024, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.024, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Bacteroidales", "f__UBA932", "g__Cryptobacteroides", "s__Cryptobacteroides sp024402115" ], "_genome_taxon": [ "Bacteroidales", "bacterium", "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Bacteroidales", "f__UBA932", "g__Cryptobacteroides", "s__Cryptobacteroides sp024402115", "Bacteria", "Bacteroidota", "Bacteroidia", "Bacteroidales", "UBA932", "Cryptobacteroides", "Cryptobacteroides", "sp024402115" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }