{
    "type": "genome",
    "identifier": "GCA_024403855.1",
    "organism": "Saccharofermentans sp.",
    "title": "Saccharofermentans sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "INRA",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_024403855.1",
        "bioproject": "PRJNA438436",
        "biosample": "SAMN24148180",
        "wgs_master": "JAKSRC000000000.1",
        "refseq_category": "na",
        "taxid": "2775029",
        "species_taxid": "2775029",
        "organism_name": "Saccharofermentans sp.",
        "infraspecific_name": "",
        "isolate": "Horse_feces245",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/07/25",
        "asm_name": "ASM2440385v1",
        "submitter": "INRA",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/403/855/GCA_024403855.1_ASM2440385v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-07-25",
    "dateModified": "2022-07-25",
    "datePublished": "2022-07-25",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Saccharofermentans sp."
        ],
        "sample_taxid": [
            "2775029"
        ],
        "sample_host_organism": [
            "Equus caballus"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "France: Fontainebleau"
        ],
        "sample_host_location_id": [],
        "data_size": "0.592 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 91.67,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2081467",
        "Number of Sequences": "42",
        "Longest Sequences (bp)": "247864",
        "N50 (bp)": "81558",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "42.7",
        "Number of CDSs": "1762",
        "Average Protein Length": "356.3",
        "Coding Ratio (%)": "90.5",
        "Number of rRNAs": "0",
        "Number of tRNAs": "37",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 91.67,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
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                "accession": "GCA_902782235.1",
                "gtdb_species": "s__Saccharofermentans sp902782235",
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                "matched_fragments": 340,
                "total_fragments": 677,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Saccharofermentanales;f__Saccharofermentanaceae;g__Saccharofermentans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.76",
                "min_intra_species_ani": "98.60",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCA_003149065.1",
                "gtdb_species": "s__Saccharofermentans sp003149065",
                "ani": 81.3292,
                "matched_fragments": 384,
                "total_fragments": 677,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Saccharofermentanales;f__Saccharofermentanaceae;g__Saccharofermentans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.57",
                "min_intra_species_ani": "96.36",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_902780785.1",
                "gtdb_species": "s__Saccharofermentans sp902780785",
                "ani": 81.3112,
                "matched_fragments": 360,
                "total_fragments": 677,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Saccharofermentanales;f__Saccharofermentanaceae;g__Saccharofermentans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.16",
                "min_intra_species_ani": "98.16",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_902801755.1",
                "gtdb_species": "s__Saccharofermentans sp902801755",
                "ani": 81.299,
                "matched_fragments": 297,
                "total_fragments": 677,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Saccharofermentanales;f__Saccharofermentanaceae;g__Saccharofermentans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.05",
                "min_intra_species_ani": "98.05",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_902764825.1",
                "gtdb_species": "s__Saccharofermentans sp902764825",
                "ani": 81.1975,
                "matched_fragments": 343,
                "total_fragments": 677,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Saccharofermentanales;f__Saccharofermentanaceae;g__Saccharofermentans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.58",
                "min_intra_species_ani": "96.60",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_900107185.1",
                "gtdb_species": "s__Saccharofermentans sp900107185",
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                "total_fragments": 677,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Saccharofermentanales;f__Saccharofermentanaceae;g__Saccharofermentans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001604135.1",
                "gtdb_species": "s__Saccharofermentans sp001604135",
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                "matched_fragments": 371,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Saccharofermentanales;f__Saccharofermentanaceae;g__Saccharofermentans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016292145.1",
                "gtdb_species": "s__Saccharofermentans sp016292145",
                "ani": 80.6573,
                "matched_fragments": 314,
                "total_fragments": 677,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Saccharofermentanales;f__Saccharofermentanaceae;g__Saccharofermentans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.51",
                "min_intra_species_ani": "97.51",
                "mean_intra_species_af": "0.74",
                "min_intra_species_af": "0.74",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017428155.1",
                "gtdb_species": "s__Saccharofermentans sp017428155",
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                "matched_fragments": 306,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Saccharofermentanales;f__Saccharofermentanaceae;g__Saccharofermentans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.63",
                "min_intra_species_ani": "97.45",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_000621765.1",
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                "total_fragments": 677,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Saccharofermentanales;f__Saccharofermentanaceae;g__Saccharofermentans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017554745.1",
                "gtdb_species": "s__Saccharofermentans sp017554745",
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                "matched_fragments": 295,
                "total_fragments": 677,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Saccharofermentanales;f__Saccharofermentanaceae;g__Saccharofermentans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017537905.1",
                "gtdb_species": "s__Saccharofermentans sp017537905",
                "ani": 80.4413,
                "matched_fragments": 207,
                "total_fragments": 677,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Saccharofermentanales;f__Saccharofermentanaceae;g__Saccharofermentans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017427465.1",
                "gtdb_species": "s__Saccharofermentans sp017427465",
                "ani": 80.35,
                "matched_fragments": 286,
                "total_fragments": 677,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Saccharofermentanales;f__Saccharofermentanaceae;g__Saccharofermentans",
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                "mean_intra_species_ani": "97.19",
                "min_intra_species_ani": "97.19",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_902788505.1",
                "gtdb_species": "s__Saccharofermentans sp902788505",
                "ani": 80.2541,
                "matched_fragments": 309,
                "total_fragments": 677,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Saccharofermentanales;f__Saccharofermentanaceae;g__Saccharofermentans",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
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            },
            {
                "accession": "GCA_016292155.1",
                "gtdb_species": "s__Saccharofermentans sp016292155",
                "ani": 80.1694,
                "matched_fragments": 282,
                "total_fragments": 677,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Saccharofermentanales;f__Saccharofermentanaceae;g__Saccharofermentans",
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                "mean_intra_species_ani": "N/A",
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                "status": "-"
            },
            {
                "accession": "GCA_017510605.1",
                "gtdb_species": "s__Saccharofermentans sp017510605",
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                "total_fragments": 677,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Saccharofermentanales;f__Saccharofermentanaceae;g__Saccharofermentans",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017509245.1",
                "gtdb_species": "s__Saccharofermentans sp017509245",
                "ani": 79.9726,
                "matched_fragments": 271,
                "total_fragments": 677,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Saccharofermentanales;f__Saccharofermentanaceae;g__Saccharofermentans",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902776845.1",
                "gtdb_species": "s__Saccharofermentans sp902776845",
                "ani": 79.5565,
                "matched_fragments": 243,
                "total_fragments": 677,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Saccharofermentanales;f__Saccharofermentanaceae;g__Saccharofermentans",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.222,
        "cell_length": 0.079,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": 37.0,
        "optimum_ph": 6.5,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
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        "p__Bacillota_A",
        "c__Clostridia",
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        "f__Saccharofermentanaceae",
        "g__Saccharofermentans",
        "s__Saccharofermentans sp024403855"
    ],
    "_genome_taxon": [
        "Saccharofermentans",
        "sp.",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Saccharofermentanales",
        "f__Saccharofermentanaceae",
        "g__Saccharofermentans",
        "s__Saccharofermentans sp024403855",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Saccharofermentanales",
        "Saccharofermentanaceae",
        "Saccharofermentans",
        "Saccharofermentans",
        "sp024403855"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}