{ "type": "genome", "identifier": "GCA_024405455.1", "organism": "Akkermansia sp.", "title": "Akkermansia sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "INRA", "publication": [ {} ], "properties": { "assembly_accession": "GCA_024405455.1", "bioproject": "PRJNA438436", "biosample": "SAMN24148119", "wgs_master": "JAKSOT000000000.1", "refseq_category": "na", "taxid": "1872421", "species_taxid": "1872421", "organism_name": "Akkermansia sp.", "infraspecific_name": "", "isolate": "Horse_feces184", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/07/25", "asm_name": "ASM2440545v1", "submitter": "INRA", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/405/455/GCA_024405455.1_ASM2440545v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-07-25", "dateModified": "2022-07-25", "datePublished": "2022-07-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Akkermansia sp." ], "sample_taxid": [ "1872421" ], "sample_host_organism": [ "Equus caballus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France: Fontainebleau" ], "sample_host_location_id": [], "data_size": "0.651 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.96, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2346285", "Number of Sequences": "154", "Longest Sequences (bp)": "69053", "N50 (bp)": "22760", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.9", "Number of CDSs": "1698", "Average Protein Length": "382.1", "Coding Ratio (%)": "83.0", "Number of rRNAs": "0", "Number of tRNAs": "41", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Akkermansia glycaniphila", "strain": "strain=Pyt", "accession": "GCA_001683795.1", "taxid": 1679444, "species_taxid": 1679444, "relation_to_type": "type", "validated": true, "ani": 77.3384, "matched_fragments": 87, "total_fragments": 706, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Akkermansia muciniphila", "strain": "strain=ATCC BAA-835", "accession": "GCA_000020225.1", "taxid": 239935, "species_taxid": 239935, "relation_to_type": "type", "validated": true, "ani": 76.7619, "matched_fragments": 66, "total_fragments": 706, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Akkermansia muciniphila", "strain": "strain=ATCC BAA-835", "accession": "GCA_017504145.1", "taxid": 239935, "species_taxid": 239935, 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