{ "type": "genome", "identifier": "GCA_024508855.1", "organism": "Xanthobacteraceae bacterium", "title": "Xanthobacteraceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Sao Paulo", "publication": [ {} ], "properties": { "assembly_accession": "GCA_024508855.1", "bioproject": "PRJNA849167", "biosample": "SAMN29921371", "wgs_master": "JANINJ000000000.1", "refseq_category": "na", "taxid": "2021379", "species_taxid": "2021379", "organism_name": "Xanthobacteraceae bacterium", "infraspecific_name": "", "isolate": "Bin.001_Forest", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/08/03", "asm_name": "ASM2450885v1", "submitter": "University of Sao Paulo", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/508/855/GCA_024508855.1_ASM2450885v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-08-03", "dateModified": "2022-08-03", "datePublished": "2022-08-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Xanthobacteraceae bacterium" ], "sample_taxid": [ "2021379" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Brazil: Eastern Amazon" ], "sample_host_location_id": [], "data_size": "1.445 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5163739", "Number of Sequences": "107", "Longest Sequences (bp)": "445733", "N50 (bp)": "151135", "Gap Ratio (%)": "0.011619", "GCcontent (%)": "62.0", "Number of CDSs": "4745", "Average Protein Length": "310.0", "Coding Ratio (%)": "85.5", "Number of rRNAs": "3", "Number of tRNAs": "51", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bradyrhizobium sediminis", "strain": "strain=S2-20-1", "accession": "GCA_018736085.1", "taxid": 2840469, "species_taxid": 2840469, "relation_to_type": "type", "validated": true, "ani": 80.5382, "matched_fragments": 845, "total_fragments": 1669, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodopseudomonas rhenobacensis", "strain": "strain=DSM 12706", "accession": "GCA_014203125.1", "taxid": 87461, "species_taxid": 87461, "relation_to_type": "type", "validated": true, "ani": 80.4431, "matched_fragments": 715, "total_fragments": 1669, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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2511166, "species_taxid": 2511166, "relation_to_type": "type", "validated": true, "ani": 80.2938, "matched_fragments": 932, "total_fragments": 1669, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium quebecense", "strain": "strain=66S1MB, /ecotype=symbiovar septentrionalis", "accession": "GCA_013373795.3", "taxid": 2748629, "species_taxid": 2748629, "relation_to_type": "type", "validated": true, "ani": 80.2895, "matched_fragments": 926, "total_fragments": 1669, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium oropedii", "strain": "strain=Pear76", "accession": "GCA_020889685.1", "taxid": 1571201, "species_taxid": 1571201, "relation_to_type": "type", "validated": true, "ani": 80.2871, "matched_fragments": 870, "total_fragments": 1669, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium macuxiense", "strain": "strain=BR 10303", "accession": "GCA_001542415.1", "taxid": 1755647, 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80.0492, "matched_fragments": 878, "total_fragments": 1669, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium cajani", "strain": "strain=1010", "accession": "GCA_009759665.1", "taxid": 1928661, "species_taxid": 1928661, "relation_to_type": "type", "validated": true, "ani": 80.0245, "matched_fragments": 805, "total_fragments": 1669, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium betae", "strain": "strain=CECT 5829", "accession": "GCA_024806875.1", "taxid": 244734, "species_taxid": 244734, "relation_to_type": "type", "validated": true, "ani": 80.0048, "matched_fragments": 827, "total_fragments": 1669, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium cosmicum", "strain": "strain=58S1", "accession": "GCA_007290395.1", "taxid": 1404864, "species_taxid": 1404864, "relation_to_type": "type", "validated": true, "ani": 79.991, "matched_fragments": 812, "total_fragments": 1669, 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