{ "type": "genome", "identifier": "GCA_024508875.1", "organism": "Phenylobacterium sp.", "title": "Phenylobacterium sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University of Sao Paulo", "publication": [ {} ], "properties": { "assembly_accession": "GCA_024508875.1", "bioproject": "PRJNA849167", "biosample": "SAMN29921382", "wgs_master": "JANINU000000000.1", "refseq_category": "na", "taxid": "1871053", "species_taxid": "1871053", "organism_name": "Phenylobacterium sp.", "infraspecific_name": "", "isolate": "Bin.007_Pasture", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/08/03", "asm_name": "ASM2450887v1", "submitter": "University of Sao Paulo", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/508/875/GCA_024508875.1_ASM2450887v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-08-03", "dateModified": "2022-08-03", "datePublished": "2022-08-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Phenylobacterium sp." ], "sample_taxid": [ "1871053" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Brazil: Eastern Amazon" ], "sample_host_location_id": [], "data_size": "1.321 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 79.86, "contamination": 8.33, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4812195", "Number of Sequences": "359", "Longest Sequences (bp)": "125323", "N50 (bp)": "22875", "Gap Ratio (%)": "0.008915", "GCcontent (%)": "69.5", "Number of CDSs": "4414", "Average Protein Length": "302.5", "Coding Ratio (%)": "83.2", "Number of rRNAs": "1", "Number of tRNAs": "44", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Phenylobacterium kunshanense", "strain": "strain=BUT-10", "accession": "GCA_003254525.1", "taxid": 1445034, "species_taxid": 1445034, "relation_to_type": "type", "validated": true, "ani": 82.6956, "matched_fragments": 856, "total_fragments": 1410, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phenylobacterium zucineum", "strain": "strain=HLK1", "accession": "GCA_000017265.1", "taxid": 284016, "species_taxid": 284016, "relation_to_type": "type", "validated": true, "ani": 81.8835, "matched_fragments": 764, "total_fragments": 1410, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phenylobacterium hankyongense", "strain": "strain=HKS-05", "accession": "GCA_003254505.1", "taxid": 1813876, "species_taxid": 1813876, "relation_to_type": "type", "validated": true, "ani": 81.0422, "matched_fragments": 660, "total_fragments": 1410, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phenylobacterium soli", "strain": "strain=LX32", "accession": "GCA_003254475.1", "taxid": 2170551, "species_taxid": 2170551, "relation_to_type": "type", "validated": true, "ani": 80.9183, "matched_fragments": 665, "total_fragments": 1410, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phenylobacterium deserti", "strain": "strain=YIM 73061", "accession": "GCA_003254705.1", "taxid": 1914756, "species_taxid": 1914756, "relation_to_type": "type", "validated": true, "ani": 79.5934, "matched_fragments": 520, "total_fragments": 1410, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phenylobacterium glaciei", "strain": "strain=20VBR1", "accession": "GCA_016772415.2", "taxid": 2803784, "species_taxid": 2803784, "relation_to_type": "type", "validated": true, "ani": 79.4487, "matched_fragments": 583, "total_fragments": 1410, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phenylobacterium aquaticum", "strain": "strain=KACC 18306", "accession": "GCA_022695515.1", "taxid": 1763816, "species_taxid": 1763816, "relation_to_type": "type", "validated": true, "ani": 79.3946, "matched_fragments": 656, "total_fragments": 1410, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter mirabilis", "strain": "strain=FWC 38", "accession": "GCA_002749615.1", "taxid": 69666, "species_taxid": 69666, "relation_to_type": "type", "validated": true, "ani": 78.8649, "matched_fragments": 536, "total_fragments": 1410, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter rhizosphaerae", "strain": "strain=CGMCC 1.15915", "accession": "GCA_014645055.1", "taxid": 2010972, "species_taxid": 2010972, "relation_to_type": "type", "validated": true, "ani": 78.5676, "matched_fragments": 551, "total_fragments": 1410, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas viscosa", "strain": "strain=CGMCC 1.10683", "accession": "GCA_900116065.1", "taxid": 871741, "species_taxid": 871741, "relation_to_type": "type", "validated": true, "ani": 77.8149, "matched_fragments": 342, "total_fragments": 1410, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas albigilva", "strain": "strain=KEME 9005-016", "accession": "GCA_023503965.1", "taxid": 1312364, "species_taxid": 1312364, "relation_to_type": "type", "validated": true, "ani": 77.6711, "matched_fragments": 346, "total_fragments": 1410, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenibaculum pallidiluteum", "strain": "strain=SYSU D00532", "accession": "GCA_017355985.1", "taxid": 2812559, "species_taxid": 2812559, "relation_to_type": "type", "validated": true, "ani": 75.774, 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