{ "type": "genome", "identifier": "GCA_024636495.1", "organism": "Roseobacter sp.", "title": "Roseobacter sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "McGill University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_024636495.1", "bioproject": "PRJNA699472", "biosample": "SAMN18640946", "wgs_master": "JAGXGZ000000000.1", "refseq_category": "na", "taxid": "1907202", "species_taxid": "1907202", "organism_name": "Roseobacter sp.", "infraspecific_name": "", "isolate": "LH_M50", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/08/11", "asm_name": "ASM2463649v1", "submitter": "McGill University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/636/495/GCA_024636495.1_ASM2463649v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-08-11", "dateModified": "2022-08-11", "datePublished": "2022-08-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Roseobacter sp." ], "sample_taxid": [ "1907202" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada:Nunavut" ], "sample_host_location_id": [], "data_size": "1.106 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 61.46, "contamination": 6.25, "strain_heterogeneity": 50.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3884858", "Number of Sequences": "95", "Longest Sequences (bp)": "176275", "N50 (bp)": "68833", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "56.7", "Number of CDSs": "3748", "Average Protein Length": "307.6", "Coding Ratio (%)": "89.0", "Number of rRNAs": "0", "Number of tRNAs": "34", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sulfitobacter marinus", "strain": "strain=DSM 23422", "accession": "GCA_900116285.1", "taxid": 394264, "species_taxid": 394264, "relation_to_type": "type", "validated": true, "ani": 80.4973, "matched_fragments": 648, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter pontiacus", "strain": "strain=DSM 10014", "accession": "GCA_900106935.1", "taxid": 60137, "species_taxid": 60137, "relation_to_type": "type", "validated": true, "ani": 79.6575, "matched_fragments": 587, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter litoralis", "strain": "strain=DSM 17584", "accession": "GCA_900103185.1", "taxid": 335975, "species_taxid": 335975, "relation_to_type": "type", "validated": true, "ani": 79.4451, "matched_fragments": 534, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter geojensis", "strain": "strain=MM-124", "accession": "GCA_000622325.1", "taxid": 1342299, "species_taxid": 1342299, "relation_to_type": "type", "validated": true, "ani": 77.8191, "matched_fragments": 376, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter indolifex", "strain": "strain=HEL-45", "accession": "GCA_000172095.1", "taxid": 225422, "species_taxid": 225422, "relation_to_type": "type", "validated": true, "ani": 77.7666, "matched_fragments": 314, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter geojensis", "strain": "strain=DSM 101063", "accession": "GCA_013407805.1", "taxid": 1342299, "species_taxid": 1342299, "relation_to_type": "type", "validated": true, "ani": 77.7408, "matched_fragments": 385, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter indolifex", "strain": "strain=DSM 14862", "accession": "GCA_022788655.1", "taxid": 225422, "species_taxid": 225422, "relation_to_type": "type", "validated": true, "ani": 77.7173, "matched_fragments": 321, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter mediterraneus", "strain": "strain=DSM 12244", "accession": "GCA_003054325.1", "taxid": 83219, "species_taxid": 83219, "relation_to_type": "type", "validated": true, "ani": 77.6542, "matched_fragments": 375, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter noctilucae", "strain": "strain=NB-68", "accession": "GCA_000622365.1", "taxid": 1342302, "species_taxid": 1342302, "relation_to_type": "type", "validated": true, "ani": 77.506, "matched_fragments": 362, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter noctilucicola", "strain": "strain=NB-77", "accession": "GCA_000622385.1", "taxid": 1342301, "species_taxid": 1342301, "relation_to_type": "type", "validated": true, "ani": 77.0845, "matched_fragments": 307, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter noctilucicola", "strain": "strain=DSM 101015", "accession": "GCA_014197555.1", "taxid": 1342301, "species_taxid": 1342301, "relation_to_type": "type", "validated": true, "ani": 77.0562, "matched_fragments": 312, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola antarcticus", "strain": "strain=Ar-45", "accession": "GCA_002786285.1", "taxid": 1247613, "species_taxid": 1247613, "relation_to_type": "type", "validated": true, "ani": 76.41, "matched_fragments": 116, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola antarcticus", "strain": "strain=CGMCC 1.12662", "accession": "GCA_900215355.1", "taxid": 1247613, "species_taxid": 1247613, "relation_to_type": "type", "validated": true, "ani": 76.4082, "matched_fragments": 116, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marivivens niveibacter", "strain": "strain=MCCC 1A06712", "accession": "GCA_002150005.2", "taxid": 1930667, "species_taxid": 1930667, "relation_to_type": "type", "validated": true, "ani": 76.0729, "matched_fragments": 107, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus sediminis", "strain": "strain=DSM 26170", "accession": "GCA_900188295.1", "taxid": 1214787, "species_taxid": 1214787, "relation_to_type": "type", "validated": true, "ani": 76.0589, "matched_fragments": 93, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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80.9167, "matched_fragments": 576, "total_fragments": 1248, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Sulfitobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000156335.1", "gtdb_species": "s__Sulfitobacter sp000156335", "ani": 80.756, "matched_fragments": 726, "total_fragments": 1248, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Sulfitobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900116285.1", "gtdb_species": "s__Sulfitobacter marinus", "ani": 80.4971, "matched_fragments": 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