{ "type": "genome", "identifier": "GCA_024641005.1", "organism": "Acidimicrobiaceae bacterium", "title": "Acidimicrobiaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Handley Lab, University of Auckland", "publication": [ {} ], "properties": { "assembly_accession": "GCA_024641005.1", "bioproject": "PRJNA668816", "biosample": "SAMN19289903", "wgs_master": "JAHEDX000000000.1", "refseq_category": "na", "taxid": "2024894", "species_taxid": "2024894", "organism_name": "Acidimicrobiaceae bacterium", "infraspecific_name": "", "isolate": "Ww244", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/08/12", "asm_name": "ASM2464100v1", "submitter": "Handley Lab, University of Auckland", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/641/005/GCA_024641005.1_ASM2464100v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-08-12", "dateModified": "2022-08-12", "datePublished": "2022-08-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Acidimicrobiaceae bacterium" ], "sample_taxid": [ "2024894" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "New Zealand: Waiwera River, Auckland" ], "sample_host_location_id": [], "data_size": "1.139 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 1.89, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", 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"total_fragments": 1289, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desertimonas flava", "strain": "strain=SYSU D60003", "accession": "GCA_003426815.1", "taxid": 2064846, "species_taxid": 2064846, "relation_to_type": "type", "validated": true, "ani": 77.0632, "matched_fragments": 310, "total_fragments": 1289, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ilumatobacter coccineus", "strain": "strain=YM16-304", "accession": "GCA_000348785.1", "taxid": 467094, "species_taxid": 467094, "relation_to_type": "type", "validated": true, "ani": 76.9989, "matched_fragments": 332, "total_fragments": 1289, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhabdothermincola salaria", "strain": "strain=EGI L10124", "accession": "GCA_021246445.1", "taxid": 2903142, "species_taxid": 2903142, "relation_to_type": "type", "validated": true, "ani": 76.1793, "matched_fragments": 150, "total_fragments": 1289, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhabdothermincola sediminis", "strain": "strain=SYSU G02662", "accession": "GCA_014805525.1", "taxid": 2751370, "species_taxid": 2751370, "relation_to_type": "type", "validated": true, "ani": 75.7705, "matched_fragments": 114, "total_fragments": 1289, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lacusdianchii", "strain": "strain=JXJ CY 38", "accession": "GCA_020102855.1", "taxid": 2783664, "species_taxid": 2783664, "relation_to_type": "type", "validated": true, "ani": 75.333, "matched_fragments": 95, "total_fragments": 1289, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides hwasunensis", "strain": "strain=19197", "accession": "GCA_014779665.1", "taxid": 397258, "species_taxid": 397258, "relation_to_type": "type", "validated": true, "ani": 75.2452, "matched_fragments": 105, "total_fragments": 1289, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides furvisabuli", "strain": "strain=JCM 13813", "accession": "GCA_021083185.1", "taxid": 375542, "species_taxid": 375542, "relation_to_type": "type", "validated": true, "ani": 75.2026, "matched_fragments": 101, "total_fragments": 1289, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptosporangium becharense", "strain": "strain=CECT 8961", "accession": "GCA_014191075.1", "taxid": 1816182, "species_taxid": 1816182, "relation_to_type": "type", "validated": true, "ani": 75.0949, "matched_fragments": 93, "total_fragments": 1289, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides exalbidus", "strain": "strain=DSM 22017", "accession": "GCA_900105585.1", "taxid": 402596, "species_taxid": 402596, "relation_to_type": "type", "validated": true, "ani": 75.0479, "matched_fragments": 106, "total_fragments": 1289, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura parmotrematis", "strain": "strain=PM05-2", "accession": "GCA_019458805.1", "taxid": 2864039, "species_taxid": 2864039, "relation_to_type": "type", "validated": true, "ani": 74.9654, "matched_fragments": 154, "total_fragments": 1289, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 1.89, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_004364865.1", "gtdb_species": "s__Ilumatobacter fluminis", "ani": 78.3345, "matched_fragments": 529, "total_fragments": 1289, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__Ilumatobacteraceae;g__Ilumatobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002698945.1", "gtdb_species": "s__Ilumatobacter sp002698945", "ani": 78.2446, "matched_fragments": 382, 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