{ "type": "genome", "identifier": "GCA_024641015.1", "organism": "Micrococcales bacterium", "title": "Micrococcales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Handley Lab, University of Auckland", "publication": [ {} ], "properties": { "assembly_accession": "GCA_024641015.1", "bioproject": "PRJNA668816", "biosample": "SAMN19289900", "wgs_master": "JAHEDU000000000.1", "refseq_category": "na", "taxid": "2026762", "species_taxid": "2026762", "organism_name": "Micrococcales bacterium", "infraspecific_name": "", "isolate": "Ww224", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/08/12", "asm_name": "ASM2464101v1", "submitter": "Handley Lab, University of Auckland", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/641/015/GCA_024641015.1_ASM2464101v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-08-12", "dateModified": "2022-08-12", "datePublished": "2022-08-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Micrococcales bacterium" ], "sample_taxid": [ "2026762" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "New Zealand: Waiwera River, Auckland" ], "sample_host_location_id": [], "data_size": "0.368 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1302568", "Number of Sequences": "91", "Longest Sequences (bp)": "79125", "N50 (bp)": "22592", "Gap Ratio (%)": "0.038386", "GCcontent (%)": "61.5", "Number of CDSs": "1202", "Average Protein Length": "312.3", "Coding Ratio (%)": "86.5", "Number of rRNAs": "1", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Microcella putealis", "strain": "strain=CV2", "accession": "GCA_004216575.1", "taxid": 337005, "species_taxid": 337005, "relation_to_type": "type", "validated": true, "ani": 78.3135, "matched_fragments": 87, "total_fragments": 388, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Okibacterium fritillariae", "strain": "strain=VKM Ac-2059", "accession": "GCA_900167575.1", "taxid": 123320, "species_taxid": 123320, "relation_to_type": "type", "validated": true, "ani": 78.0192, "matched_fragments": 80, "total_fragments": 388, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium ginsengisoli", "strain": "strain=DSM 18659", "accession": "GCA_000956535.1", "taxid": 400772, "species_taxid": 400772, "relation_to_type": "type", "validated": true, "ani": 77.6383, "matched_fragments": 59, "total_fragments": 388, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agrococcus jejuensis", "strain": "strain=DSM 22002", "accession": "GCA_900099705.1", "taxid": 399736, "species_taxid": 399736, "relation_to_type": "type", "validated": true, "ani": 77.6335, "matched_fragments": 70, "total_fragments": 388, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseoglobus frigidaquae", "strain": "strain=DSM 23889", "accession": "GCA_009664385.2", "taxid": 424758, "species_taxid": 424758, "relation_to_type": "type", "validated": true, "ani": 77.6255, "matched_fragments": 98, "total_fragments": 388, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseoglobus frigidaquae", "strain": "strain=DSM 23889", "accession": "GCA_014200395.1", "taxid": 424758, "species_taxid": 424758, "relation_to_type": "type", "validated": true, "ani": 77.5419, "matched_fragments": 100, "total_fragments": 388, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rathayibacter oskolensis", "strain": "strain=VKM Ac-2121", "accession": "GCA_900177245.1", "taxid": 1891671, "species_taxid": 1891671, "relation_to_type": "type", "validated": true, "ani": 77.4755, "matched_fragments": 78, "total_fragments": 388, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycetocola zhujimingii", "strain": "strain=449 = CGMCC 1.16372", "accession": "GCA_003065425.1", "taxid": 2079792, "species_taxid": 2079792, "relation_to_type": "type", "validated": true, "ani": 77.4451, "matched_fragments": 72, "total_fragments": 388, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces humatus", "strain": "strain=JCM 14319", "accession": "GCA_021228295.1", "taxid": 279573, "species_taxid": 279573, "relation_to_type": "type", "validated": true, "ani": 77.4422, "matched_fragments": 88, "total_fragments": 388, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium commune", "strain": "strain=Re1", "accession": "GCA_014836945.1", "taxid": 2762219, "species_taxid": 2762219, "relation_to_type": "type", "validated": true, "ani": 77.4239, "matched_fragments": 68, "total_fragments": 388, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces mariniharenae", "strain": "strain=NEAU-184", "accession": "GCA_008122505.1", "taxid": 2604423, "species_taxid": 2604423, "relation_to_type": "type", "validated": true, "ani": 77.3307, "matched_fragments": 95, "total_fragments": 388, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Protaetiibacter larvae", "strain": "strain=KACC 19322", "accession": "GCA_008365275.1", "taxid": 2592654, "species_taxid": 2592654, "relation_to_type": "type", "validated": true, "ani": 77.2824, "matched_fragments": 77, "total_fragments": 388, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Labedella phragmitis", "strain": "strain=11W25H-1", "accession": "GCA_004078635.1", "taxid": 2498849, "species_taxid": 2498849, "relation_to_type": "type", "validated": true, "ani": 77.1824, "matched_fragments": 75, "total_fragments": 388, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces subbeticus", "strain": "strain=DSM 16689", "accession": "GCA_000421565.1", "taxid": 293890, "species_taxid": 293890, "relation_to_type": "type", "validated": true, "ani": 77.0854, "matched_fragments": 92, "total_fragments": 388, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces cerinus subsp. cerinus", "strain": "strain=DSM 8595", "accession": "GCA_900142065.1", "taxid": 232089, "species_taxid": 33878, "relation_to_type": "type", "validated": true, "ani": 77.0769, "matched_fragments": 103, "total_fragments": 388, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium cremeum", "strain": "strain=NY27", "accession": "GCA_015277855.1", "taxid": 2782169, "species_taxid": 2782169, "relation_to_type": "type", "validated": true, "ani": 77.0666, "matched_fragments": 71, "total_fragments": 388, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cryobacterium soli", "strain": "strain=GCJ02", "accession": "GCA_003611035.1", "taxid": 2220095, "species_taxid": 2220095, "relation_to_type": "type", "validated": true, "ani": 77.0083, "matched_fragments": 78, "total_fragments": 388, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces hippuratus", "strain": "strain=DSM 8598", "accession": "GCA_013410355.1", "taxid": 286438, "species_taxid": 286438, "relation_to_type": "type", "validated": true, "ani": 77.0042, "matched_fragments": 98, "total_fragments": 388, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces fucosus", "strain": "strain=CCUG 35506", "accession": "GCA_004134865.1", "taxid": 41985, "species_taxid": 41985, "relation_to_type": "type", "validated": true, "ani": 76.9979, "matched_fragments": 90, "total_fragments": 388, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium paraoxydans", "strain": "strain=DSM 15019", "accession": "GCA_900105335.1", "taxid": 199592, "species_taxid": 199592, "relation_to_type": "suspected-type", "validated": true, "ani": 76.9344, "matched_fragments": 64, "total_fragments": 388, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Protaetiibacter intestinalis", "strain": "strain=2DFWR-13", "accession": "GCA_003627075.1", "taxid": 2419774, "species_taxid": 2419774, "relation_to_type": "type", "validated": true, "ani": 76.8997, "matched_fragments": 94, "total_fragments": 388, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium paraoxydans", "strain": "strain=NBRC 103076", "accession": "GCA_001552495.1", "taxid": 199592, "species_taxid": 199592, "relation_to_type": "suspected-type", "validated": true, "ani": 76.8688, "matched_fragments": 64, "total_fragments": 388, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agrococcus sediminis", "strain": "strain=NS18", "accession": "GCA_007923295.1", "taxid": 2599924, "species_taxid": 2599924, "relation_to_type": "type", "validated": true, "ani": 76.615, "matched_fragments": 75, "total_fragments": 388, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sanguibacter keddieii", "strain": "strain=DSM 10542", "accession": "GCA_000024925.1", "taxid": 60920, "species_taxid": 60920, "relation_to_type": "type", "validated": true, "ani": 76.2567, "matched_fragments": 58, "total_fragments": 388, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_903940225.1", "gtdb_species": "s__MWH-TA3 sp903940225", "ani": 80.8906, "matched_fragments": 225, "total_fragments": 388, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__MWH-TA3", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.80", "min_intra_species_ani": "99.50", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCA_003053925.1", "gtdb_species": "s__MWH-TA3 sp003053925", "ani": 78.755, "matched_fragments": 107, "total_fragments": 388, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__MWH-TA3", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016463265.1", "gtdb_species": "s__MWH-TA3 sp016463265", "ani": 78.6765, "matched_fragments": 94, "total_fragments": 388, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__MWH-TA3", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009704155.1", "gtdb_species": "s__MWH-TA3 sp009704155", "ani": 78.6553, "matched_fragments": 95, "total_fragments": 388, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__MWH-TA3", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900099705.1", "gtdb_species": "s__Agrococcus jejuensis", "ani": 77.6335, "matched_fragments": 70, "total_fragments": 388, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Agrococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002280615.1", "gtdb_species": "s__Chryseoglobus sp002280615", "ani": 77.5166, "matched_fragments": 68, "total_fragments": 388, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Chryseoglobus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016807485.1", "gtdb_species": "s__Microbacterium sp016807485", "ani": 77.4335, "matched_fragments": 57, "total_fragments": 388, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007679045.1", "gtdb_species": "s__Microbacterium sp007679045", "ani": 77.3966, "matched_fragments": 81, "total_fragments": 388, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.00", "min_intra_species_ani": "99.00", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014595885.1", "gtdb_species": "s__Yonghaparkia alkaliphila_A", "ani": 77.3963, 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