{
    "type": "genome",
    "identifier": "GCA_024641065.1",
    "organism": "Rhodoluna sp.",
    "title": "Rhodoluna sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Handley Lab, University of Auckland",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_024641065.1",
        "bioproject": "PRJNA668816",
        "biosample": "SAMN19289901",
        "wgs_master": "JAHEDV000000000.1",
        "refseq_category": "na",
        "taxid": "1969481",
        "species_taxid": "1969481",
        "organism_name": "Rhodoluna sp.",
        "infraspecific_name": "",
        "isolate": "Ww23",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/08/12",
        "asm_name": "ASM2464106v1",
        "submitter": "Handley Lab, University of Auckland",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/641/065/GCA_024641065.1_ASM2464106v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-08-12",
    "dateModified": "2022-08-12",
    "datePublished": "2022-08-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Rhodoluna sp."
        ],
        "sample_taxid": [
            "1969481"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "New Zealand: Waiwera River, Auckland"
        ],
        "sample_host_location_id": [],
        "data_size": "0.408 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 79.8,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1429493",
        "Number of Sequences": "33",
        "Longest Sequences (bp)": "440182",
        "N50 (bp)": "199185",
        "Gap Ratio (%)": "0.013991",
        "GCcontent (%)": "52.1",
        "Number of CDSs": "1328",
        "Average Protein Length": "329.0",
        "Coding Ratio (%)": "91.7",
        "Number of rRNAs": "0",
        "Number of tRNAs": "42",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Rhodoluna limnophila",
                "strain": "strain=27D-LEPI",
                "accession": "GCA_005845365.1",
                "taxid": 232537,
                "species_taxid": 232537,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.9965,
                "matched_fragments": 214,
                "total_fragments": 455,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodoluna lacicola",
                "strain": "strain=MWH-Ta8",
                "accession": "GCA_000699505.1",
                "taxid": 529884,
                "species_taxid": 529884,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4492,
                "matched_fragments": 141,
                "total_fragments": 455,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Candidatus Rhodoluna planktonica",
                "strain": "strain=MWH-Dar1",
                "accession": "GCA_001854225.1",
                "taxid": 535712,
                "species_taxid": 535712,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7337,
                "matched_fragments": 95,
                "total_fragments": 455,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 79.8,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_005845365.1",
                "gtdb_species": "s__Rhodoluna limnophila",
                "ani": 79.9965,
                "matched_fragments": 214,
                "total_fragments": 455,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Rhodoluna",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.04",
                "min_intra_species_ani": "97.94",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_009703445.1",
                "gtdb_species": "s__Rhodoluna sp009703445",
                "ani": 79.05,
                "matched_fragments": 117,
                "total_fragments": 455,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Rhodoluna",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017984715.1",
                "gtdb_species": "s__Rhodoluna sp017984715",
                "ani": 78.7665,
                "matched_fragments": 73,
                "total_fragments": 455,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Rhodoluna",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000699505.1",
                "gtdb_species": "s__Rhodoluna lacicola",
                "ani": 78.4492,
                "matched_fragments": 141,
                "total_fragments": 455,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Rhodoluna",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017983965.1",
                "gtdb_species": "s__Rhodoluna sp017983965",
                "ani": 78.2758,
                "matched_fragments": 89,
                "total_fragments": 455,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Rhodoluna",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.54",
                "min_intra_species_ani": "99.54",
                "mean_intra_species_af": "0.80",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_903866485.1",
                "gtdb_species": "s__Rhodoluna sp903866485",
                "ani": 78.2067,
                "matched_fragments": 92,
                "total_fragments": 455,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Rhodoluna",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001854225.1",
                "gtdb_species": "s__Rhodoluna planktonica",
                "ani": 77.7337,
                "matched_fragments": 95,
                "total_fragments": 455,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Rhodoluna",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903893675.1",
                "gtdb_species": "s__Rhodoluna sp903893675",
                "ani": 77.7161,
                "matched_fragments": 75,
                "total_fragments": 455,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Rhodoluna",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009703845.1",
                "gtdb_species": "s__Rhodoluna sp009703845",
                "ani": 77.4592,
                "matched_fragments": 55,
                "total_fragments": 455,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Rhodoluna",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903887175.1",
                "gtdb_species": "s__Rhodoluna sp903887175",
                "ani": 77.3591,
                "matched_fragments": 85,
                "total_fragments": 455,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Rhodoluna",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.56",
                "min_intra_species_ani": "99.56",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_002479805.1",
                "gtdb_species": "s__Aquiluna sp002479805",
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                "matched_fragments": 50,
                "total_fragments": 455,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Aquiluna",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903824455.1",
                "gtdb_species": "s__Rhodoluna sp903824455",
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                "matched_fragments": 51,
                "total_fragments": 455,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Rhodoluna",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.64",
                "min_intra_species_ani": "96.28",
                "mean_intra_species_af": "0.77",
                "min_intra_species_af": "0.73",
                "num_clustered_genomes": 5,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.523,
        "cell_length": -0.046,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": 1427470.533,
        "gc_content": 51.75,
        "coding_genes": 1340.75,
        "rRNA16S_genes": 1.0,
        "tRNA_genes": 39.5,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 1.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Actinomycetes",
        "o__Actinomycetales",
        "f__Microbacteriaceae",
        "g__Rhodoluna",
        "s__Rhodoluna sp024641065"
    ],
    "_genome_taxon": [
        "Rhodoluna",
        "sp.",
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Actinomycetes",
        "o__Actinomycetales",
        "f__Microbacteriaceae",
        "g__Rhodoluna",
        "s__Rhodoluna sp024641065",
        "Bacteria",
        "Actinomycetota",
        "Actinomycetes",
        "Actinomycetales",
        "Microbacteriaceae",
        "Rhodoluna",
        "Rhodoluna",
        "sp024641065"
    ],
    "_meo": [
        {
            "id": "MEO_0000087",
            "label": "estuary"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}