{ "type": "genome", "identifier": "GCA_024641085.1", "organism": "Geobacteraceae bacterium", "title": "Geobacteraceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Handley Lab, University of Auckland", "publication": [ {} ], "properties": { "assembly_accession": "GCA_024641085.1", "bioproject": "PRJNA668816", "biosample": "SAMN19289899", "wgs_master": "JAHEDT000000000.1", "refseq_category": "na", "taxid": "2282154", "species_taxid": "2282154", "organism_name": "Geobacteraceae bacterium", "infraspecific_name": "", "isolate": "Ww219", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/08/12", "asm_name": "ASM2464108v1", "submitter": "Handley Lab, University of Auckland", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/641/085/GCA_024641085.1_ASM2464108v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-08-12", "dateModified": "2022-08-12", "datePublished": "2022-08-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Geobacteraceae bacterium" ], "sample_taxid": [ "2282154" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "New Zealand: Waiwera River, Auckland" ], "sample_host_location_id": [], "data_size": "1.005 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3511853", "Number of Sequences": "152", "Longest Sequences (bp)": "226816", "N50 (bp)": "55995", "Gap Ratio (%)": "0.048407", "GCcontent (%)": "58.1", "Number of CDSs": "3074", "Average Protein Length": "314.5", "Coding Ratio (%)": "82.6", "Number of rRNAs": "4", "Number of tRNAs": "51", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Geothermobacter ehrlichii", "strain": "strain=SS015", "accession": "GCA_008124615.1", "taxid": 213224, "species_taxid": 213224, "relation_to_type": "type", "validated": true, "ani": 77.9863, "matched_fragments": 198, "total_fragments": 1090, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfuromonas versatilis", "strain": "strain=NIT-T3", "accession": "GCA_019704135.1", "taxid": 2802975, "species_taxid": 2802975, "relation_to_type": "type", "validated": true, "ani": 77.7802, "matched_fragments": 254, "total_fragments": 1090, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geothermobacter hydrogeniphilus", "strain": "strain=EPR-M", "accession": "GCA_002093115.1", "taxid": 1969733, "species_taxid": 1969733, "relation_to_type": "type", "validated": true, "ani": 77.485, "matched_fragments": 194, "total_fragments": 1090, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfuromonas soudanensis", "strain": "strain=WTL", "accession": "GCA_001278055.1", "taxid": 1603606, "species_taxid": 1603606, "relation_to_type": "type", "validated": true, "ani": 77.2047, "matched_fragments": 182, "total_fragments": 1090, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Syntrophotalea acetylenivorans", "strain": "strain=SFB93", "accession": "GCA_001887775.1", "taxid": 1842532, "species_taxid": 1842532, "relation_to_type": "type", "validated": true, "ani": 77.1407, "matched_fragments": 60, "total_fragments": 1090, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfuromonas acetexigens", "strain": "strain=2873", "accession": "GCA_007051125.1", "taxid": 38815, "species_taxid": 38815, "relation_to_type": "type", "validated": true, "ani": 76.9942, "matched_fragments": 146, "total_fragments": 1090, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfuromonas acetexigens", "strain": "", "accession": "GCA_900111775.1", "taxid": 38815, "species_taxid": 38815, "relation_to_type": "type", "validated": true, "ani": 76.9942, "matched_fragments": 146, "total_fragments": 1090, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geoalkalibacter subterraneus", "strain": "strain=Red1", "accession": "GCA_000827125.1", "taxid": 483547, "species_taxid": 483547, "relation_to_type": "type", "validated": true, "ani": 76.9501, "matched_fragments": 100, "total_fragments": 1090, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geoalkalibacter ferrihydriticus", "strain": "strain=DSM 17813", "accession": "GCA_000820505.1", "taxid": 392333, "species_taxid": 392333, "relation_to_type": "type", "validated": true, "ani": 76.8233, "matched_fragments": 84, "total_fragments": 1090, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geoalkalibacter ferrihydriticus", "strain": "strain=DSM 17813", "accession": "GCA_900103065.1", "taxid": 392333, "species_taxid": 392333, "relation_to_type": "type", "validated": true, "ani": 76.8042, "matched_fragments": 86, "total_fragments": 1090, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geoalkalibacter halelectricus", "strain": "strain=SAP-1", "accession": "GCA_025263685.1", "taxid": 2847045, "species_taxid": 2847045, "relation_to_type": "type", "validated": true, "ani": 76.7933, "matched_fragments": 138, "total_fragments": 1090, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geobacter benzoatilyticus", "strain": "strain=Jerry-YX", "accession": "GCA_017338855.1", "taxid": 2815309, "species_taxid": 2815309, "relation_to_type": "type", "validated": true, "ani": 76.753, "matched_fragments": 54, "total_fragments": 1090, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelobacter seleniigenes", "strain": "strain=DSM 18267", "accession": "GCA_000711225.1", "taxid": 407188, "species_taxid": 407188, "relation_to_type": "type", "validated": true, "ani": 76.7225, "matched_fragments": 94, "total_fragments": 1090, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelovirga terrestris", "strain": "strain=M08fum", "accession": "GCA_014773365.1", "taxid": 2771352, "species_taxid": 2771352, "relation_to_type": "type", "validated": true, "ani": 76.4289, "matched_fragments": 54, "total_fragments": 1090, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geobacter pickeringii", "strain": "strain=G13", "accession": "GCA_000817955.1", "taxid": 345632, "species_taxid": 345632, "relation_to_type": "type", "validated": true, "ani": 76.3406, 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