{ "type": "genome", "identifier": "GCA_024641635.1", "organism": "Actinomycetia bacterium", "title": "Actinomycetia bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Handley Lab, University of Auckland", "publication": [ {} ], "properties": { "assembly_accession": "GCA_024641635.1", "bioproject": "PRJNA668816", "biosample": "SAMN19289872", "wgs_master": "JAHECS000000000.1", "refseq_category": "na", "taxid": "1883427", "species_taxid": "1883427", "organism_name": "Actinomycetia bacterium", "infraspecific_name": "", "isolate": "Ww175", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/08/12", "asm_name": "ASM2464163v1", "submitter": "Handley Lab, University of Auckland", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/641/635/GCA_024641635.1_ASM2464163v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-08-12", "dateModified": "2022-08-12", "datePublished": "2022-08-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinomycetia bacterium" ], "sample_taxid": [ "1883427" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "New Zealand: Waiwera River, Auckland" ], "sample_host_location_id": [], "data_size": "0.832 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3060365", "Number of Sequences": "82", "Longest Sequences (bp)": "185061", "N50 (bp)": "86411", "Gap Ratio (%)": "0.143774", "GCcontent (%)": "69.6", "Number of CDSs": "2911", "Average Protein Length": "320.4", "Coding Ratio (%)": "91.4", "Number of rRNAs": "3", "Number of tRNAs": "41", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Motilibacter peucedani", "strain": "strain=RP-AC37", "accession": "GCA_003634695.1", "taxid": 598650, "species_taxid": 598650, "relation_to_type": "type", "validated": true, "ani": 77.3827, "matched_fragments": 220, "total_fragments": 980, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Knoellia aerolata", "strain": "strain=DSM 18566", "accession": "GCA_000768695.1", "taxid": 442954, "species_taxid": 442954, "relation_to_type": "type", "validated": true, "ani": 77.1749, "matched_fragments": 180, "total_fragments": 980, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Motilibacter rhizosphaerae", "strain": "strain=DSM 45622", "accession": "GCA_004216915.1", "taxid": 598652, "species_taxid": 598652, "relation_to_type": "type", "validated": true, "ani": 77.0979, "matched_fragments": 222, "total_fragments": 980, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides salarius", "strain": "strain=DSM 18239", "accession": "GCA_016907435.1", "taxid": 374513, "species_taxid": 374513, "relation_to_type": "type", "validated": true, "ani": 77.0899, "matched_fragments": 207, "total_fragments": 980, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides salarius", "strain": "strain=DSM 18239", "accession": "GCA_015070765.1", "taxid": 374513, "species_taxid": 374513, "relation_to_type": "type", "validated": true, "ani": 77.0243, "matched_fragments": 209, "total_fragments": 980, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides salarius", "strain": "strain=DSM 18239", "accession": "GCA_015339545.1", "taxid": 374513, "species_taxid": 374513, "relation_to_type": "type", "validated": true, "ani": 77.0003, "matched_fragments": 211, "total_fragments": 980, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudokineococcus marinus", "strain": "strain=JCM 14547", "accession": "GCA_013004605.1", "taxid": 351215, "species_taxid": 351215, "relation_to_type": "type", "validated": true, "ani": 76.8069, "matched_fragments": 171, "total_fragments": 980, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinotalea subterranea", "strain": "strain=HO-Ch2", "accession": "GCA_008364845.1", "taxid": 2607497, "species_taxid": 2607497, "relation_to_type": "type", "validated": true, "ani": 76.803, "matched_fragments": 180, "total_fragments": 980, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces mobaraensis", "strain": "strain=DSM 40847", "accession": "GCA_017916255.1", "taxid": 35621, "species_taxid": 35621, "relation_to_type": "type", "validated": true, "ani": 76.783, "matched_fragments": 206, "total_fragments": 980, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella alba", "strain": "strain=DSM 45237", "accession": "GCA_900106035.1", "taxid": 561176, "species_taxid": 561176, "relation_to_type": "type", "validated": true, "ani": 76.7718, "matched_fragments": 243, "total_fragments": 980, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arsenicicoccus cauae", "strain": "strain=MKL-02", "accession": "GCA_009707125.1", "taxid": 2663847, "species_taxid": 2663847, "relation_to_type": "type", "validated": true, "ani": 76.7455, "matched_fragments": 176, "total_fragments": 980, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinotalea solisilvae", "strain": "strain=KACC 19191", "accession": "GCA_016464425.1", "taxid": 2072922, "species_taxid": 2072922, "relation_to_type": "type", "validated": true, "ani": 76.71, 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"status": "below_threshold" }, { "organism_name": "Streptacidiphilus jiangxiensis", "strain": "strain=NBRC 100920", "accession": "GCA_000787795.1", "taxid": 235985, "species_taxid": 235985, "relation_to_type": "type", "validated": true, "ani": 76.6447, "matched_fragments": 234, "total_fragments": 980, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces mobaraensis", "strain": "strain=DSM 40847", "accession": "GCA_000342125.1", "taxid": 35621, "species_taxid": 35621, "relation_to_type": "type", "validated": true, "ani": 76.6361, "matched_fragments": 201, "total_fragments": 980, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides exalbidus", "strain": "strain=DSM 22017", "accession": "GCA_900105585.1", "taxid": 402596, "species_taxid": 402596, "relation_to_type": "type", "validated": true, "ani": 76.6352, "matched_fragments": 214, "total_fragments": 980, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces laurentii", "strain": "strain=ATCC 31255", "accession": "GCA_002355495.1", "taxid": 39478, "species_taxid": 39478, "relation_to_type": "type", "validated": true, "ani": 76.6155, "matched_fragments": 227, "total_fragments": 980, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella alkaliphila", "strain": "strain=DSM 45079", "accession": "GCA_900105925.1", "taxid": 419479, "species_taxid": 419479, "relation_to_type": "type", "validated": true, "ani": 76.6013, "matched_fragments": 267, "total_fragments": 980, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanitalea stevensii", "strain": "strain=Sa1BUA1", "accession": "GCA_014837105.1", "taxid": 2763072, "species_taxid": 2763072, "relation_to_type": "type", "validated": true, "ani": 76.5913, "matched_fragments": 154, "total_fragments": 980, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides soli", "strain": "strain=DSM 105498", "accession": "GCA_014191495.1", "taxid": 1036020, "species_taxid": 1036020, "relation_to_type": "type", "validated": true, "ani": 76.5892, "matched_fragments": 231, "total_fragments": 980, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinomonas atrocyanea", "strain": "strain=NBRC 12956", "accession": "GCA_006539205.1", "taxid": 37927, "species_taxid": 37927, "relation_to_type": "type", "validated": true, "ani": 76.5719, "matched_fragments": 140, "total_fragments": 980, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura flavalba", "strain": "strain=DSM 45200", "accession": "GCA_000374305.1", "taxid": 1120938, "species_taxid": 1120938, "relation_to_type": "type", "validated": true, "ani": 76.5575, "matched_fragments": 198, "total_fragments": 980, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella alkaliphila", "strain": "strain=KCTC 19222", "accession": "GCA_001005145.1", "taxid": 419479, 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