{
    "type": "genome",
    "identifier": "GCA_024641735.1",
    "organism": "Gemmatimonadota bacterium",
    "title": "Gemmatimonadota bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Handley Lab, University of Auckland",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_024641735.1",
        "bioproject": "PRJNA668816",
        "biosample": "SAMN19289867",
        "wgs_master": "JAHECN000000000.1",
        "refseq_category": "na",
        "taxid": "2026742",
        "species_taxid": "2026742",
        "organism_name": "Gemmatimonadota bacterium",
        "infraspecific_name": "",
        "isolate": "Ww170",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/08/12",
        "asm_name": "ASM2464173v1",
        "submitter": "Handley Lab, University of Auckland",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/641/735/GCA_024641735.1_ASM2464173v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-08-12",
    "dateModified": "2022-08-12",
    "datePublished": "2022-08-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Gemmatimonadota bacterium"
        ],
        "sample_taxid": [
            "2026742"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "New Zealand: Waiwera River, Auckland"
        ],
        "sample_host_location_id": [],
        "data_size": "0.775 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 99.54,
        "contamination": 4.17,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2749567",
        "Number of Sequences": "245",
        "Longest Sequences (bp)": "66306",
        "N50 (bp)": "15330",
        "Gap Ratio (%)": "0.036369",
        "GCcontent (%)": "65.0",
        "Number of CDSs": "2254",
        "Average Protein Length": "331.9",
        "Coding Ratio (%)": "81.6",
        "Number of rRNAs": "1",
        "Number of tRNAs": "39",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Gemmatimonas groenlandica",
                "strain": "strain=TET16",
                "accession": "GCA_013004105.1",
                "taxid": 2732249,
                "species_taxid": 2732249,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 52,
                "total_fragments": 791,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gemmatirosa kalamazoonensis",
                "strain": "strain=KBS708",
                "accession": "GCA_000522985.1",
                "taxid": 861299,
                "species_taxid": 861299,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.2994,
                "matched_fragments": 87,
                "total_fragments": 791,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 99.54,
            "contamination": 4.17,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_016704275.1",
                "gtdb_species": "s__Palsa-1233 sp016704275",
                "ani": 78.9075,
                "matched_fragments": 374,
                "total_fragments": 791,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__Palsa-1233",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.87",
                "min_intra_species_ani": "97.54",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_016720805.1",
                "gtdb_species": "s__Palsa-1233 sp016720805",
                "ani": 78.8052,
                "matched_fragments": 372,
                "total_fragments": 791,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__Palsa-1233",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.28",
                "min_intra_species_ani": "98.28",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_011390645.1",
                "gtdb_species": "s__Palsa-1233 sp011390645",
                "ani": 77.7835,
                "matched_fragments": 143,
                "total_fragments": 791,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__Palsa-1233",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013694695.1",
                "gtdb_species": "s__Palsa-1233 sp013694695",
                "ani": 77.2344,
                "matched_fragments": 130,
                "total_fragments": 791,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__Palsa-1233",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003169895.1",
                "gtdb_species": "s__Palsa-1233 sp003169895",
                "ani": 76.7215,
                "matched_fragments": 125,
                "total_fragments": 791,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__Palsa-1233",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.93",
                "min_intra_species_ani": "99.86",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_016713785.1",
                "gtdb_species": "s__JADJOM01 sp016713785",
                "ani": 76.5068,
                "matched_fragments": 106,
                "total_fragments": 791,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__JADJOM01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.05",
                "min_intra_species_ani": "98.46",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 10,
                "status": "-"
            },
            {
                "accession": "GCA_017889745.1",
                "gtdb_species": "s__JAGGAG01 sp017889745",
                "ani": 76.2075,
                "matched_fragments": 73,
                "total_fragments": 791,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__JAGGAG01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_004525055.1",
                "gtdb_species": "s__SPDF01 sp004525055",
                "ani": 75.9078,
                "matched_fragments": 54,
                "total_fragments": 791,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__SPDF01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Gemmatimonadota",
        "c__Gemmatimonadetes",
        "o__Gemmatimonadales",
        "f__GWC2-71-9",
        "g__Palsa-1233",
        "s__Palsa-1233 sp024641735"
    ],
    "_genome_taxon": [
        "Gemmatimonadota",
        "bacterium",
        "d__Bacteria",
        "p__Gemmatimonadota",
        "c__Gemmatimonadetes",
        "o__Gemmatimonadales",
        "f__GWC2-71-9",
        "g__Palsa-1233",
        "s__Palsa-1233 sp024641735",
        "Bacteria",
        "Gemmatimonadota",
        "Gemmatimonadetes",
        "Gemmatimonadales",
        "GWC2-71-9",
        "Palsa-1233",
        "Palsa-1233",
        "sp024641735"
    ],
    "_meo": [
        {
            "id": "MEO_0000087",
            "label": "estuary"
        },
        {
            "id": "MEO_0000066",
            "label": "sediment"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}