{ "type": "genome", "identifier": "GCA_024642005.1", "organism": "Robiginitalea sp.", "title": "Robiginitalea sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Handley Lab, University of Auckland", "publication": [ {} ], "properties": { "assembly_accession": "GCA_024642005.1", "bioproject": "PRJNA668816", "biosample": "SAMN19289854", "wgs_master": "JAHECA000000000.1", "refseq_category": "na", "taxid": "1902411", "species_taxid": "1902411", "organism_name": "Robiginitalea sp.", "infraspecific_name": "", "isolate": "Ww158", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/08/12", "asm_name": "ASM2464200v1", "submitter": "Handley Lab, University of Auckland", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/642/005/GCA_024642005.1_ASM2464200v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-08-12", "dateModified": "2022-08-12", "datePublished": "2022-08-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Robiginitalea sp." ], "sample_taxid": [ "1902411" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "New Zealand: Waiwera River, Auckland" ], "sample_host_location_id": [], "data_size": "0.981 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3435692", "Number of Sequences": "78", "Longest Sequences (bp)": "313177", "N50 (bp)": "105059", "Gap Ratio (%)": "0.043659", "GCcontent (%)": "55.6", "Number of CDSs": "2954", "Average Protein Length": "346.9", "Coding Ratio (%)": "89.5", "Number of rRNAs": "0", "Number of tRNAs": "34", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Robiginitalea sediminis", "strain": "strain=O458", "accession": "GCA_002198115.1", "taxid": 1982593, "species_taxid": 1982593, "relation_to_type": "type", "validated": true, "ani": 77.573, "matched_fragments": 325, "total_fragments": 1105, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Robiginitalea biformata", "strain": "strain=HTCC2501", "accession": "GCA_000024125.1", "taxid": 252307, "species_taxid": 252307, "relation_to_type": "type", "validated": true, "ani": 77.5059, "matched_fragments": 318, "total_fragments": 1105, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Robiginitalea myxolifaciens", "strain": "strain=DSM 21019", "accession": 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1324801, "relation_to_type": "type", "validated": true, "ani": 76.1581, "matched_fragments": 116, "total_fragments": 1105, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda amoyensis", "strain": "strain=GCL-11", "accession": "GCA_003058265.1", "taxid": 2169401, "species_taxid": 2169401, "relation_to_type": "type", "validated": true, "ani": 76.136, "matched_fragments": 74, "total_fragments": 1105, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinomicrobium kalidii", "strain": "strain=HD2P242", "accession": "GCA_021183825.1", "taxid": 2900738, "species_taxid": 2900738, "relation_to_type": "type", "validated": true, "ani": 76.1057, "matched_fragments": 51, "total_fragments": 1105, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda antarctica", "strain": "strain=CGMCC 1.12174", "accession": "GCA_900142405.1", "taxid": 1055723, "species_taxid": 1055723, "relation_to_type": "type", "validated": true, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda oceani", "strain": "strain=501str8", "accession": "GCA_019457985.1", "taxid": 2698672, "species_taxid": 2698672, "relation_to_type": "type", "validated": true, "ani": 75.6736, "matched_fragments": 56, "total_fragments": 1105, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda oceani", "strain": "strain=501str8", "accession": "GCA_011068285.1", "taxid": 2698672, "species_taxid": 2698672, "relation_to_type": "type", "validated": true, "ani": 75.6736, "matched_fragments": 56, "total_fragments": 1105, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014243345.1", "gtdb_species": "s__Robiginitalea sp014243345", "ani": 77.6468, "matched_fragments": 362, "total_fragments": 1105, "gtdb_taxonomy": 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