{ "type": "genome", "identifier": "GCA_024642045.1", "organism": "Pseudorhodobacter sp.", "title": "Pseudorhodobacter sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Handley Lab, University of Auckland", "publication": [ {} ], "properties": { "assembly_accession": "GCA_024642045.1", "bioproject": "PRJNA668816", "biosample": "SAMN19289851", "wgs_master": "JAHEBX000000000.1", "refseq_category": "na", "taxid": "1934400", "species_taxid": "1934400", "organism_name": "Pseudorhodobacter sp.", "infraspecific_name": "", "isolate": "Ww154", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/08/12", "asm_name": "ASM2464204v1", "submitter": "Handley Lab, University of Auckland", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/642/045/GCA_024642045.1_ASM2464204v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-08-12", "dateModified": "2022-08-12", "datePublished": "2022-08-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudorhodobacter sp." ], "sample_taxid": [ "1934400" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "New Zealand: Waiwera River, Auckland" ], "sample_host_location_id": [], "data_size": "0.986 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3485874", "Number of Sequences": "265", "Longest Sequences (bp)": "82919", "N50 (bp)": "19670", "Gap Ratio (%)": "0.008291", "GCcontent (%)": "60.4", "Number of CDSs": "3130", "Average Protein Length": "306.1", "Coding Ratio (%)": "82.4", "Number of rRNAs": "0", "Number of tRNAs": "44", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cypionkella psychrotolerans", "strain": "strain=PAMC 27389", "accession": "GCA_001294535.1", "taxid": 1678131, "species_taxid": 1678131, "relation_to_type": "type", "validated": true, "ani": 79.0606, "matched_fragments": 516, "total_fragments": 1030, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tabrizicola alkalilacus", "strain": "strain=DJC", "accession": "GCA_003443995.1", "taxid": 2305252, "species_taxid": 2305252, "relation_to_type": "type", "validated": true, "ani": 78.2813, "matched_fragments": 391, "total_fragments": 1030, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter fulva", "strain": "strain=con5", "accession": 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