{ "type": "genome", "identifier": "GCA_024642145.1", "organism": "Marivivens sp.", "title": "Marivivens sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Handley Lab, University of Auckland", "publication": [ {} ], "properties": { "assembly_accession": "GCA_024642145.1", "bioproject": "PRJNA668816", "biosample": "SAMN19289846", "wgs_master": "JAHEBS000000000.1", "refseq_category": "na", "taxid": "1978374", "species_taxid": "1978374", "organism_name": "Marivivens sp.", "infraspecific_name": "", "isolate": "Ww149", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/08/12", "asm_name": "ASM2464214v1", "submitter": "Handley Lab, University of Auckland", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/642/145/GCA_024642145.1_ASM2464214v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-08-12", "dateModified": "2022-08-12", "datePublished": "2022-08-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Marivivens sp." ], "sample_taxid": [ "1978374" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "New Zealand: Waiwera River, Auckland" ], "sample_host_location_id": [], "data_size": "0.742 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2648195", "Number of Sequences": "235", "Longest Sequences (bp)": "50093", "N50 (bp)": "14440", "Gap Ratio (%)": "0.007930", "GCcontent (%)": "62.7", "Number of CDSs": "2429", "Average Protein Length": "301.7", "Coding Ratio (%)": "83.0", "Number of rRNAs": "0", "Number of tRNAs": "40", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Ruegeria pomeroyi", "strain": "strain=DSS-3", "accession": "GCA_000011965.2", "taxid": 89184, "species_taxid": 89184, "relation_to_type": "suspected-type", "validated": true, "ani": 77.8918, "matched_fragments": 285, "total_fragments": 760, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter lanyuensis", "strain": "strain=KCTC 23714", "accession": "GCA_014652355.1", "taxid": 1054497, "species_taxid": 1054497, "relation_to_type": "type", "validated": true, "ani": 77.8634, "matched_fragments": 256, "total_fragments": 760, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limimaricola hongkongensis", "strain": "strain=UST950701-009P", "accession": "GCA_000365005.1", "taxid": 278132, "species_taxid": 278132, "relation_to_type": "type", "validated": true, "ani": 77.8316, "matched_fragments": 265, "total_fragments": 760, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limimaricola hongkongensis", "strain": "strain=DSM 17492", "accession": "GCA_000600975.2", "taxid": 278132, "species_taxid": 278132, "relation_to_type": "type", "validated": true, "ani": 77.8294, "matched_fragments": 266, "total_fragments": 760, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter amnigenus", "strain": "strain=HSP-20", "accession": "GCA_009908265.2", "taxid": 2852097, "species_taxid": 2852097, "relation_to_type": "type", "validated": true, "ani": 77.8091, "matched_fragments": 255, "total_fragments": 760, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter amnigenus", "strain": "strain=HSP-20", "accession": "GCA_019130055.1", "taxid": 2852097, "species_taxid": 2852097, "relation_to_type": "type", "validated": true, "ani": 77.8091, "matched_fragments": 255, "total_fragments": 760, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limimaricola variabilis", "strain": "strain=CECT 8572", "accession": "GCA_014195545.1", "taxid": 1492771, "species_taxid": 1492771, "relation_to_type": "type", "validated": true, "ani": 77.7514, "matched_fragments": 226, "total_fragments": 760, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria marisrubri", "strain": "strain=ZGT118", "accession": "GCA_001507595.1", "taxid": 1685379, "species_taxid": 1685379, "relation_to_type": "type", "validated": true, "ani": 77.7161, "matched_fragments": 255, "total_fragments": 760, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum tesquicola", "strain": "strain=A-36s", "accession": "GCA_024128855.1", "taxid": 540254, "species_taxid": 540254, "relation_to_type": "type", "validated": true, "ani": 77.7146, "matched_fragments": 221, "total_fragments": 760, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mameliella alba", "strain": "strain=CGMCC 1.7290", "accession": "GCA_900101505.1", "taxid": 561184, "species_taxid": 561184, "relation_to_type": "suspected-type", "validated": true, "ani": 77.6976, "matched_fragments": 240, "total_fragments": 760, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassobius mangrovi", "strain": "strain=GS-10", "accession": "GCA_009857745.1", "taxid": 2692236, "species_taxid": 2692236, "relation_to_type": "type", "validated": true, "ani": 77.6747, "matched_fragments": 249, "total_fragments": 760, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria marina", "strain": "strain=CGMCC 1.9108", "accession": "GCA_900101475.1", "taxid": 639004, "species_taxid": 639004, "relation_to_type": "type", "validated": true, "ani": 77.6589, "matched_fragments": 256, "total_fragments": 760, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mameliella alba", "strain": "strain=DSM 26384", "accession": "GCA_003051025.1", "taxid": 561184, "species_taxid": 561184, "relation_to_type": "suspected-type", "validated": true, "ani": 77.6582, "matched_fragments": 236, "total_fragments": 760, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria intermedia", "strain": "strain=DSM 29341", "accession": "GCA_900129345.1", "taxid": 996115, "species_taxid": 996115, "relation_to_type": "type", "validated": true, "ani": 77.6235, "matched_fragments": 259, "total_fragments": 760, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius pacificus", "strain": "strain=CGMCC 1.7083", "accession": "GCA_014645335.1", "taxid": 337701, "species_taxid": 337701, "relation_to_type": "type", "validated": true, "ani": 77.595, "matched_fragments": 224, "total_fragments": 760, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius pacificus", "strain": "strain=DSM 29589", "accession": "GCA_900142665.1", "taxid": 337701, "species_taxid": 337701, "relation_to_type": "type", "validated": true, "ani": 77.5947, "matched_fragments": 224, "total_fragments": 760, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marivivens aquimaris", "strain": "strain=GSB7", "accession": "GCA_015220045.1", "taxid": 2774876, "species_taxid": 2774876, "relation_to_type": "type", "validated": true, "ani": 77.5754, "matched_fragments": 192, "total_fragments": 760, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibacterium elongatum", "strain": "strain=DFL-43", "accession": "GCA_000590925.1", "taxid": 159346, "species_taxid": 159346, "relation_to_type": "type", "validated": true, "ani": 77.5739, "matched_fragments": 234, "total_fragments": 760, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum adriaticum", "strain": "strain=DSM 2781", "accession": "GCA_016583705.1", "taxid": 35804, "species_taxid": 35804, "relation_to_type": "type", "validated": true, "ani": 77.5293, "matched_fragments": 221, "total_fragments": 760, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Antarcticimicrobium luteum", "strain": "strain=318-1", "accession": "GCA_004358185.1", "taxid": 2547397, "species_taxid": 2547397, "relation_to_type": "type", "validated": true, "ani": 77.5146, "matched_fragments": 274, "total_fragments": 760, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alexandriicola marinus", "strain": "strain=LZ-14", "accession": "GCA_004000435.1", "taxid": 2081710, "species_taxid": 2081710, "relation_to_type": "type", "validated": true, "ani": 77.4886, "matched_fragments": 235, "total_fragments": 760, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria sediminis", "strain": "strain=CAU 1488", "accession": "GCA_005938215.1", "taxid": 2583820, "species_taxid": 2583820, "relation_to_type": "type", "validated": true, "ani": 77.4664, "matched_fragments": 235, "total_fragments": 760, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Antarcticimicrobium sediminis", "strain": "strain=S4J41", "accession": "GCA_004348975.1", "taxid": 2546227, "species_taxid": 2546227, "relation_to_type": "type", "validated": true, "ani": 77.4652, "matched_fragments": 226, "total_fragments": 760, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shimia sediminis", "strain": "strain=ZQ172", "accession": "GCA_003990645.1", "taxid": 2497945, "species_taxid": 2497945, "relation_to_type": "type", "validated": true, "ani": 77.4345, "matched_fragments": 181, "total_fragments": 760, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum adriaticum", "strain": "strain=DSM 2781", "accession": "GCA_004345735.1", "taxid": 35804, "species_taxid": 35804, "relation_to_type": "type", "validated": true, "ani": 77.3982, "matched_fragments": 227, "total_fragments": 760, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum strictum", "strain": "strain=DSM 11289", "accession": "GCA_009649175.1", "taxid": 58314, "species_taxid": 58314, "relation_to_type": "type", "validated": true, "ani": 77.3625, "matched_fragments": 244, "total_fragments": 760, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassorhabdomicrobium marinisediminis", "strain": "strain=BH-SD16", "accession": "GCA_003072065.1", "taxid": 2170577, "species_taxid": 2170577, "relation_to_type": "type", "validated": true, "ani": 77.3546, "matched_fragments": 239, "total_fragments": 760, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marivita geojedonensis", "strain": "strain=DSM 29432", "accession": "GCA_003002975.1", "taxid": 1123756, "species_taxid": 1123756, "relation_to_type": "type", "validated": true, "ani": 77.3331, "matched_fragments": 182, "total_fragments": 760, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marivita geojedonensis", "strain": "strain=DPG-138", "accession": "GCA_002115805.1", "taxid": 1123756, "species_taxid": 1123756, "relation_to_type": "type", "validated": true, "ani": 77.3322, "matched_fragments": 183, "total_fragments": 760, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius litoreus", "strain": "strain=DSM 28249", "accession": "GCA_900142765.1", "taxid": 1155722, "species_taxid": 1155722, "relation_to_type": "type", "validated": true, "ani": 77.328, "matched_fragments": 223, "total_fragments": 760, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius gaetbuli", "strain": "strain=CECT 8370", "accession": "GCA_900172365.1", "taxid": 1356575, "species_taxid": 1356575, "relation_to_type": "type", "validated": true, "ani": 77.3223, "matched_fragments": 213, "total_fragments": 760, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola algae", "strain": "strain=Lw-13e", "accession": "GCA_003590145.2", "taxid": 1537215, "species_taxid": 1537215, "relation_to_type": "type", "validated": true, "ani": 77.2566, "matched_fragments": 204, "total_fragments": 760, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cribrihabitans marinus", "strain": "strain=DSM 29340", "accession": "GCA_900109035.1", "taxid": 1227549, "species_taxid": 1227549, "relation_to_type": "type", "validated": true, "ani": 77.2312, "matched_fragments": 266, "total_fragments": 760, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cribrihabitans marinus", "strain": "strain=CGMCC 1.13219", "accession": "GCA_014640375.1", "taxid": 1227549, "species_taxid": 1227549, "relation_to_type": "type", "validated": true, "ani": 77.2229, "matched_fragments": 268, "total_fragments": 760, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aestuariivita boseongensis", "strain": "strain=BS-B2", "accession": "GCA_001262635.1", "taxid": 1470562, "species_taxid": 1470562, "relation_to_type": "type", "validated": true, "ani": 77.1506, "matched_fragments": 229, "total_fragments": 760, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagivirga dicentrarchi", "strain": "strain=YLY04", "accession": "GCA_003316635.1", "taxid": 2250573, "species_taxid": 2250573, "relation_to_type": "type", "validated": true, "ani": 77.048, "matched_fragments": 197, "total_fragments": 760, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chachezhania sediminis", "strain": "strain=CAU 1508", "accession": "GCA_009765275.1", "taxid": 2599291, "species_taxid": 2599291, "relation_to_type": "type", "validated": true, "ani": 77.0298, "matched_fragments": 219, "total_fragments": 760, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassococcus halodurans", "strain": "strain=DSM 26915", "accession": "GCA_900108225.1", "taxid": 373675, "species_taxid": 373675, "relation_to_type": "type", "validated": true, "ani": 76.9566, "matched_fragments": 161, "total_fragments": 760, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_009920775.1", "gtdb_species": "s__Marivivens sp009920775", "ani": 78.9239, "matched_fragments": 282, "total_fragments": 760, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Marivivens", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004145845.1", "gtdb_species": "s__Marivivens sp004145845", "ani": 78.3842, "matched_fragments": 302, "total_fragments": 760, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Marivivens", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002358085.1", "gtdb_species": "s__Thioclava arenosa", "ani": 78.347, "matched_fragments": 225, "total_fragments": 760, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Thioclava", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009993005.1", "gtdb_species": "s__JAACUH01 sp009993005", "ani": 78.1755, "matched_fragments": 302, "total_fragments": 760, "gtdb_taxonomy": 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