{
    "type": "genome",
    "identifier": "GCA_024642485.1",
    "organism": "Cytophagaceae bacterium",
    "title": "Cytophagaceae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Handley Lab, University of Auckland",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_024642485.1",
        "bioproject": "PRJNA668816",
        "biosample": "SAMN19289826",
        "wgs_master": "JAHEAY000000000.1",
        "refseq_category": "na",
        "taxid": "2026729",
        "species_taxid": "2026729",
        "organism_name": "Cytophagaceae bacterium",
        "infraspecific_name": "",
        "isolate": "Ww124",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/08/12",
        "asm_name": "ASM2464248v1",
        "submitter": "Handley Lab, University of Auckland",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/642/485/GCA_024642485.1_ASM2464248v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-08-12",
    "dateModified": "2022-08-12",
    "datePublished": "2022-08-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Cytophagaceae bacterium"
        ],
        "sample_taxid": [
            "2026729"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "New Zealand: Waiwera River, Auckland"
        ],
        "sample_host_location_id": [],
        "data_size": "0.731 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 77.6,
        "contamination": 4.17,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2536511",
        "Number of Sequences": "238",
        "Longest Sequences (bp)": "69111",
        "N50 (bp)": "19146",
        "Gap Ratio (%)": "0.070964",
        "GCcontent (%)": "41.4",
        "Number of CDSs": "2053",
        "Average Protein Length": "339.1",
        "Coding Ratio (%)": "82.3",
        "Number of rRNAs": "0",
        "Number of tRNAs": "32",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Aquirufa antheringensis",
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                "accession": "GCA_004307425.1",
                "taxid": 2516559,
                "species_taxid": 2516559,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 221,
                "total_fragments": 719,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aquirufa lenticrescens",
                "strain": "strain=9H-EGSE",
                "accession": "GCA_019916085.1",
                "taxid": 2696560,
                "species_taxid": 2696560,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8884,
                "matched_fragments": 213,
                "total_fragments": 719,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aquirufa aurantiipilula",
                "strain": "strain=15D-MOB",
                "accession": "GCA_019923745.1",
                "taxid": 2696561,
                "species_taxid": 2696561,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6332,
                "matched_fragments": 168,
                "total_fragments": 719,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aquirufa ecclesiirivi",
                "strain": "strain=50A-KIRBA",
                "accession": "GCA_011250515.1",
                "taxid": 2715124,
                "species_taxid": 2715124,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4302,
                "matched_fragments": 165,
                "total_fragments": 719,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aquirufa nivalisilvae",
                "strain": "strain=59G-WUEMPEL",
                "accession": "GCA_004307455.1",
                "taxid": 2516557,
                "species_taxid": 2516557,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3795,
                "matched_fragments": 170,
                "total_fragments": 719,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aquirufa beregesia",
                "strain": "strain=50C-KIRBA",
                "accession": "GCA_011090385.1",
                "taxid": 2516556,
                "species_taxid": 2516556,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.345,
                "matched_fragments": 157,
                "total_fragments": 719,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sandaracinomonas limnophila",
                "strain": "strain=FSY-15",
                "accession": "GCA_004005965.1",
                "taxid": 1862386,
                "species_taxid": 1862386,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1142,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aquirufa rosea",
                "strain": "strain=CAR-16",
                "accession": "GCA_004118285.1",
                "taxid": 2509241,
                "species_taxid": 2509241,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0377,
                "matched_fragments": 142,
                "total_fragments": 719,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 77.6,
            "contamination": 4.17,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_002454335.1",
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                "matched_fragments": 522,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Aquirufa",
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                "mean_intra_species_ani": "99.80",
                "min_intra_species_ani": "99.80",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017984215.1",
                "gtdb_species": "s__Aquirufa sp017984215",
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                "matched_fragments": 515,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Aquirufa",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.80",
                "min_intra_species_ani": "99.80",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_903898715.1",
                "gtdb_species": "s__Aquirufa sp903898715",
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                "matched_fragments": 283,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Aquirufa",
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                "mean_intra_species_ani": "99.63",
                "min_intra_species_ani": "99.56",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_004307425.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Aquirufa",
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                "mean_intra_species_ani": "97.17",
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                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_002479785.1",
                "gtdb_species": "s__Aquirufa sp002479785",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Aquirufa",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.96",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_903960725.1",
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                "matched_fragments": 128,
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
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            },
            {
                "accession": "GCA_903907745.1",
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            {
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                "mean_intra_species_ani": "N/A",
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            {
                "accession": "GCA_004005965.1",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_004118285.1",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.232,
        "cell_length": 0.526,
        "doubling_h": null,
        "growth_tmp": 26.902,
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        "genome_size": 6461989.452,
        "gc_content": 45.029,
        "coding_genes": 5174.515,
        "rRNA16S_genes": 2.888,
        "tRNA_genes": 41.35,
        "gram_stain": 0.0,
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        "mesophilic_range_tmp": 0.875,
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        "bacillus_cell_shape": 1.0,
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        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
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    "_gtdb_taxon": [
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        "p__Bacteroidota",
        "c__Bacteroidia",
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        "g__Aquirufa",
        "s__Aquirufa sp024642485"
    ],
    "_genome_taxon": [
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        "bacterium",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Cytophagales",
        "f__Spirosomataceae",
        "g__Aquirufa",
        "s__Aquirufa sp024642485",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Cytophagales",
        "Spirosomataceae",
        "Aquirufa",
        "Aquirufa",
        "sp024642485"
    ],
    "_meo": [
        {
            "id": "MEO_0000087",
            "label": "estuary"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}