{ "type": "genome", "identifier": "GCA_024643255.1", "organism": "Ilumatobacteraceae bacterium", "title": "Ilumatobacteraceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Handley Lab, University of Auckland", "publication": [ {} ], "properties": { "assembly_accession": "GCA_024643255.1", "bioproject": "PRJNA668816", "biosample": "SAMN19290145", "wgs_master": "JAHENF000000000.1", "refseq_category": "na", "taxid": "2497619", "species_taxid": "2497619", "organism_name": "Ilumatobacteraceae bacterium", "infraspecific_name": "", "isolate": "Ww99", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/08/12", "asm_name": "ASM2464325v1", "submitter": "Handley Lab, University of Auckland", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/643/255/GCA_024643255.1_ASM2464325v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-08-12", "dateModified": "2022-08-12", "datePublished": "2022-08-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Ilumatobacteraceae bacterium" ], "sample_taxid": [ "2497619" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "New Zealand: Waiwera River, Auckland" ], "sample_host_location_id": [], "data_size": "0.971 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3574569", "Number of Sequences": "100", "Longest Sequences (bp)": "212941", "N50 (bp)": "64625", "Gap Ratio (%)": "0.156662", "GCcontent (%)": "67.6", "Number of CDSs": "3328", "Average Protein Length": "325.7", "Coding Ratio (%)": "91.0", "Number of rRNAs": "0", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Ilumatobacter coccineus", "strain": "strain=YM16-304", "accession": "GCA_000348785.1", "taxid": 467094, "species_taxid": 467094, "relation_to_type": "type", "validated": true, "ani": 78.3979, "matched_fragments": 504, "total_fragments": 1140, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ilumatobacter nonamiensis", "strain": "strain=YM16-303", "accession": "GCA_000350145.1", "taxid": 467093, "species_taxid": 467093, "relation_to_type": "type", "validated": true, "ani": 78.3655, "matched_fragments": 427, "total_fragments": 1140, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ilumatobacter fluminis", "strain": "strain=DSM 18936", "accession": "GCA_004364865.1", "taxid": 467091, "species_taxid": 467091, "relation_to_type": "type", "validated": true, "ani": 77.8578, "matched_fragments": 431, "total_fragments": 1140, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desertimonas flava", "strain": "strain=SYSU D60003", "accession": "GCA_003426815.1", "taxid": 2064846, "species_taxid": 2064846, "relation_to_type": "type", "validated": true, "ani": 77.6259, "matched_fragments": 402, "total_fragments": 1140, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhabdothermincola salaria", "strain": "strain=EGI L10124", "accession": "GCA_021246445.1", "taxid": 2903142, "species_taxid": 2903142, "relation_to_type": "type", "validated": true, "ani": 76.6345, "matched_fragments": 186, "total_fragments": 1140, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phycicoccus endophyticus", "strain": "strain=IP6SC6", "accession": "GCA_011326735.1", "taxid": 1690220, "species_taxid": 1690220, "relation_to_type": "type", "validated": true, "ani": 75.4615, "matched_fragments": 109, "total_fragments": 1140, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phycicoccus endophyticus", "strain": "strain=CGMCC 4.7300", "accession": "GCA_014646175.1", "taxid": 1690220, "species_taxid": 1690220, "relation_to_type": "type", "validated": true, "ani": 75.4419, "matched_fragments": 111, "total_fragments": 1140, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Demequina salsinemoris", "strain": "strain=NBRC 105323", "accession": "GCA_000974805.1", "taxid": 577470, "species_taxid": 577470, "relation_to_type": "type", "validated": true, "ani": 75.3021, "matched_fragments": 78, "total_fragments": 1140, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Catellatospora chokoriensis", "strain": "strain=2-25(1)", "accession": "GCA_011297315.1", "taxid": 310353, "species_taxid": 310353, "relation_to_type": "type", "validated": true, "ani": 75.2456, "matched_fragments": 176, "total_fragments": 1140, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clavibacter michiganensis", "strain": "strain=LMG7333", "accession": "GCA_021216655.1", "taxid": 28447, "species_taxid": 28447, "relation_to_type": "suspected-type", "validated": true, "ani": 75.2397, "matched_fragments": 119, "total_fragments": 1140, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora rhizosphaerae", "strain": "strain=H219", "accession": "GCA_003931915.1", "taxid": 2492662, "species_taxid": 2492662, "relation_to_type": "type", "validated": true, "ani": 75.1954, "matched_fragments": 109, "total_fragments": 1140, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klenkia marina", "strain": "strain=DSM 45722", "accession": "GCA_900101025.1", "taxid": 1960309, "species_taxid": 1960309, "relation_to_type": "type", "validated": true, "ani": 75.1835, "matched_fragments": 138, "total_fragments": 1140, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dactylosporangium aurantiacum", "strain": "strain=NRRL B-8018", "accession": "GCA_025264705.1", "taxid": 35754, "species_taxid": 35754, "relation_to_type": "type", "validated": true, "ani": 75.0274, "matched_fragments": 238, "total_fragments": 1140, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantimonas coralicida", "strain": "strain=DSM 14790", "accession": "GCA_000421645.1", "taxid": 182270, "species_taxid": 182270, "relation_to_type": "type", "validated": true, "ani": 74.9306, "matched_fragments": 73, "total_fragments": 1140, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantimonas coralicida", "strain": "strain=DSM 14790", "accession": "GCA_001463825.1", "taxid": 182270, "species_taxid": 182270, "relation_to_type": "type", "validated": true, "ani": 74.8962, "matched_fragments": 73, "total_fragments": 1140, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_013002175.1", "gtdb_species": "s__Ilumatobacter_A sp013002175", "ani": 78.9777, "matched_fragments": 421, "total_fragments": 1140, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__Ilumatobacteraceae;g__Ilumatobacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000348785.1", "gtdb_species": "s__Ilumatobacter_A coccineus", "ani": 78.4209, "matched_fragments": 501, "total_fragments": 1140, "gtdb_taxonomy": 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