{ "type": "genome", "identifier": "GCA_024643305.1", "organism": "Thiobacillaceae bacterium", "title": "Thiobacillaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Handley Lab, University of Auckland", "publication": [ {} ], "properties": { "assembly_accession": "GCA_024643305.1", "bioproject": "PRJNA668816", "biosample": "SAMN19290144", "wgs_master": "JAHENE000000000.1", "refseq_category": "na", "taxid": "2528409", "species_taxid": "2528409", "organism_name": "Thiobacillaceae bacterium", "infraspecific_name": "", "isolate": "Ww98", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/08/12", "asm_name": "ASM2464330v1", "submitter": "Handley Lab, University of Auckland", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/643/305/GCA_024643305.1_ASM2464330v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-08-12", "dateModified": "2022-08-12", "datePublished": "2022-08-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Thiobacillaceae bacterium" ], "sample_taxid": [ "2528409" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "New Zealand: Waiwera River, Auckland" ], "sample_host_location_id": [], "data_size": "0.601 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 70.14, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2081496", "Number of Sequences": "311", "Longest Sequences (bp)": "30046", "N50 (bp)": "8404", "Gap Ratio (%)": "0.021763", "GCcontent (%)": "56.1", "Number of CDSs": "1835", "Average Protein Length": "280.9", "Coding Ratio (%)": "74.3", "Number of rRNAs": "0", "Number of tRNAs": "27", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thiobacillus thioparus", "strain": "strain=DSM 505", "accession": "GCA_000373385.1", "taxid": 931, "species_taxid": 931, "relation_to_type": "type", "validated": true, "ani": 78.1051, "matched_fragments": 135, "total_fragments": 541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiobacillus denitrificans", "strain": "strain=DSM 12475", "accession": "GCA_000376425.1", "taxid": 36861, "species_taxid": 36861, "relation_to_type": "type", "validated": true, "ani": 77.6361, "matched_fragments": 142, "total_fragments": 541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfuritortus 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"accession": "GCA_007992375.1", "taxid": 171865, "species_taxid": 171865, "relation_to_type": "type", "validated": true, "ani": 77.229, "matched_fragments": 85, "total_fragments": 541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfurimicrobium lacus", "strain": "strain=skT11", "accession": "GCA_011764585.1", "taxid": 2715678, "species_taxid": 2715678, "relation_to_type": "type", "validated": true, "ani": 77.0201, "matched_fragments": 88, "total_fragments": 541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azoarcus indigens", "strain": "strain=VB32", "accession": "GCA_012910835.1", "taxid": 29545, "species_taxid": 29545, "relation_to_type": "type", "validated": true, "ani": 77.0114, "matched_fragments": 58, "total_fragments": 541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ferrigenium kumadai", "strain": "strain=An22", "accession": "GCA_018324385.1", "taxid": 1682490, "species_taxid": 1682490, "relation_to_type": "type", "validated": true, "ani": 76.689, "matched_fragments": 70, "total_fragments": 541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupriavidus lacunae", "strain": "strain=S23", "accession": "GCA_003353055.1", "taxid": 2666307, "species_taxid": 2666307, "relation_to_type": "type", "validated": true, "ani": 76.4239, "matched_fragments": 61, "total_fragments": 541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromobacterium alticapitis", "strain": "strain=MWU14-2602", "accession": "GCA_002924365.1", "taxid": 2073169, "species_taxid": 2073169, "relation_to_type": "type", "validated": true, "ani": 76.3926, "matched_fragments": 63, "total_fragments": 541, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupriavidus oxalaticus", "strain": "strain=Ox1", "accession": "GCA_016894385.1", "taxid": 96344, "species_taxid": 96344, "relation_to_type": "type", "validated": true, "ani": 76.3628, 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