{ "type": "genome", "identifier": "GCA_024643345.1", "organism": "Maribacter sp.", "title": "Maribacter sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Handley Lab, University of Auckland", "publication": [ {} ], "properties": { "assembly_accession": "GCA_024643345.1", "bioproject": "PRJNA668816", "biosample": "SAMN19290141", "wgs_master": "JAHENB000000000.1", "refseq_category": "na", "taxid": "1897614", "species_taxid": "1897614", "organism_name": "Maribacter sp.", "infraspecific_name": "", "isolate": "Ww89", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/08/12", "asm_name": "ASM2464334v1", "submitter": "Handley Lab, University of Auckland", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/643/345/GCA_024643345.1_ASM2464334v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-08-12", "dateModified": "2022-08-12", "datePublished": "2022-08-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Maribacter sp." ], "sample_taxid": [ "1897614" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "New Zealand: Waiwera River, Auckland" ], "sample_host_location_id": [], "data_size": "1.055 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3695226", "Number of Sequences": "67", "Longest Sequences (bp)": "347801", "N50 (bp)": "107777", "Gap Ratio (%)": "0.083892", "GCcontent (%)": "44.1", "Number of CDSs": "3131", "Average Protein Length": "343.8", "Coding Ratio (%)": "87.4", "Number of rRNAs": "0", "Number of tRNAs": "33", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pelagihabitans pacificus", "strain": "strain=TP-CH-4", "accession": "GCA_009371985.2", "taxid": 2696054, "species_taxid": 2696054, "relation_to_type": "type", "validated": true, "ani": 76.772, "matched_fragments": 198, "total_fragments": 1192, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aggregatimonas sangjinii", "strain": "strain=F202Z8", "accession": "GCA_005943945.1", "taxid": 2583587, "species_taxid": 2583587, "relation_to_type": "type", "validated": true, "ani": 76.6156, "matched_fragments": 148, "total_fragments": 1192, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter polysiphoniae", "strain": "strain=DSM 23514", "accession": "GCA_003148665.1", "taxid": 429344, "species_taxid": 429344, "relation_to_type": "type", "validated": true, "ani": 76.6104, "matched_fragments": 141, "total_fragments": 1192, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter polysiphoniae", "strain": "strain=KCTC 22021", "accession": "GCA_014673435.1", "taxid": 429344, "species_taxid": 429344, "relation_to_type": "type", "validated": true, "ani": 76.6078, "matched_fragments": 140, "total_fragments": 1192, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenibacter hampyeongensis", "strain": "strain=JCM 17788", "accession": "GCA_002909255.1", "taxid": 1028743, "species_taxid": 1028743, "relation_to_type": "type", "validated": true, "ani": 76.4228, "matched_fragments": 103, "total_fragments": 1192, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenibacter echinorum", "strain": "strain=DSM 23522", "accession": "GCA_003259375.1", "taxid": 440515, "species_taxid": 440515, "relation_to_type": "type", "validated": true, "ani": 76.3569, "matched_fragments": 126, "total_fragments": 1192, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenibacter catalasegens", "strain": "strain=P308H10", "accession": "GCA_002909235.1", "taxid": 2056779, "species_taxid": 2056779, "relation_to_type": "type", "validated": true, "ani": 76.3274, "matched_fragments": 117, "total_fragments": 1192, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter arenosus", "strain": "strain=CAU 1321", "accession": "GCA_014610845.1", "taxid": 1854708, "species_taxid": 1854708, "relation_to_type": "type", "validated": true, "ani": 76.3096, "matched_fragments": 131, "total_fragments": 1192, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenibacter palladensis", "strain": "strain=DSM 17539", "accession": "GCA_900129275.1", "taxid": 237373, "species_taxid": 237373, "relation_to_type": "type", "validated": true, "ani": 76.296, "matched_fragments": 113, "total_fragments": 1192, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zobellia uliginosa", "strain": "strain=DSM 2061", "accession": "GCA_900156625.1", "taxid": 143224, "species_taxid": 143224, "relation_to_type": "type", "validated": true, "ani": 76.2947, "matched_fragments": 122, "total_fragments": 1192, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter algarum", "strain": "strain=RZ26", "accession": "GCA_005885635.1", "taxid": 2578118, "species_taxid": 2578118, "relation_to_type": "type", "validated": true, "ani": 76.2776, "matched_fragments": 96, "total_fragments": 1192, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter algicola", "strain": "strain=PoM-212", "accession": "GCA_003933245.1", "taxid": 2498892, "species_taxid": 2498892, "relation_to_type": "type", "validated": true, "ani": 76.2761, "matched_fragments": 104, "total_fragments": 1192, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter thermophilus", "strain": "strain=HT7-2", "accession": "GCA_001020565.1", "taxid": 1197874, "species_taxid": 1197874, "relation_to_type": "type", "validated": true, "ani": 76.2668, "matched_fragments": 102, "total_fragments": 1192, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter luteus", "strain": "strain=RZ05", "accession": "GCA_009674825.1", "taxid": 2594478, "species_taxid": 2594478, "relation_to_type": "type", "validated": true, "ani": 76.2526, "matched_fragments": 130, "total_fragments": 1192, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda flava", "strain": "strain=DSM 22638", "accession": "GCA_900129665.1", "taxid": 570519, "species_taxid": 570519, "relation_to_type": "type", "validated": true, "ani": 76.251, "matched_fragments": 85, "total_fragments": 1192, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Costertonia aggregata", "strain": "strain=KCCM 42265", "accession": "GCA_013402795.1", "taxid": 343403, "species_taxid": 343403, "relation_to_type": "type", "validated": true, "ani": 76.1701, "matched_fragments": 117, "total_fragments": 1192, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda maritima", "strain": "strain=72", "accession": "GCA_008017365.1", "taxid": 2306998, "species_taxid": 2306998, "relation_to_type": "type", "validated": true, "ani": 76.1313, "matched_fragments": 111, "total_fragments": 1192, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda maritima", "strain": "strain=72", "accession": "GCA_003584135.1", "taxid": 2306998, "species_taxid": 2306998, "relation_to_type": "type", "validated": true, "ani": 76.1313, "matched_fragments": 111, "total_fragments": 1192, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenibacter troitsensis", "strain": "strain=DSM 19835", "accession": "GCA_900177645.1", "taxid": 188872, "species_taxid": 188872, "relation_to_type": "type", "validated": true, "ani": 76.1075, "matched_fragments": 122, "total_fragments": 1192, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda profundi", "strain": "strain=BC31-3-A3", "accession": "GCA_017313275.1", "taxid": 2915620, "species_taxid": 2915620, "relation_to_type": "type", "validated": true, "ani": 76.0967, "matched_fragments": 75, "total_fragments": 1192, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda onchidii", "strain": "strain=XY-359", "accession": "GCA_004804315.1", "taxid": 2562684, "species_taxid": 2562684, "relation_to_type": "type", "validated": true, "ani": 76.0272, "matched_fragments": 73, "total_fragments": 1192, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zobellia barbeyronii", "strain": "strain=KMM 6746", "accession": "GCA_018603515.1", "taxid": 2748009, "species_taxid": 2748009, "relation_to_type": "type", "validated": true, "ani": 75.9957, "matched_fragments": 77, "total_fragments": 1192, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda alvinocaridis", "strain": "strain=SCR12", "accession": "GCA_004916895.1", "taxid": 2530200, "species_taxid": 2530200, "relation_to_type": "type", "validated": true, "ani": 75.9867, "matched_fragments": 115, "total_fragments": 1192, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter arcticus", "strain": "strain=DSM 23546", "accession": "GCA_900167935.1", "taxid": 561365, "species_taxid": 561365, "relation_to_type": "type", "validated": true, "ani": 75.873, "matched_fragments": 81, "total_fragments": 1192, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda aurea", "strain": "strain=BC31-1-A7", "accession": "GCA_017313785.1", "taxid": 2915619, "species_taxid": 2915619, "relation_to_type": "type", "validated": true, "ani": 75.7984, "matched_fragments": 79, "total_fragments": 1192, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_009371985.2", "gtdb_species": "s__TP-CH-4 sp009371985", "ani": 76.7838, "matched_fragments": 197, "total_fragments": 1192, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__TP-CH-4", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003148665.1", "gtdb_species": "s__Maribacter_A polysiphoniae", "ani": 76.6104, "matched_fragments": 141, "total_fragments": 1192, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Maribacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.27", "min_intra_species_ani": "98.55", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.91", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_002749285.1", "gtdb_species": "s__Maribacter_A sp002749285", "ani": 76.5682, "matched_fragments": 77, "total_fragments": 1192, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Maribacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001913155.1", "gtdb_species": "s__Maribacter hydrothermalis", "ani": 76.4381, "matched_fragments": 69, "total_fragments": 1192, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Maribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002909255.1", "gtdb_species": "s__Arenibacter hampyeongensis", "ani": 76.4228, "matched_fragments": 103, "total_fragments": 1192, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Arenibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001430825.1", "gtdb_species": "s__Sediminicola sp001430825", "ani": 76.4059, "matched_fragments": 105, "total_fragments": 1192, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Sediminicola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900141855.1", "gtdb_species": "s__Pseudozobellia thermophila", "ani": 76.4004, "matched_fragments": 137, "total_fragments": 1192, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Pseudozobellia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003201775.1", "gtdb_species": "s__Arenibacter sp003201775", "ani": 76.397, "matched_fragments": 113, "total_fragments": 1192, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Arenibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003426735.1", "gtdb_species": "s__Arenibacter sp003426735", "ani": 76.384, "matched_fragments": 133, "total_fragments": 1192, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Arenibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018679695.1", "gtdb_species": "s__Maribacter_A sp018679695", "ani": 76.3144, "matched_fragments": 105, "total_fragments": 1192, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Maribacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.00", "min_intra_species_ani": "99.00", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.82", 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"gtdb_species": "s__Maribacter algicola", "ani": 76.2761, "matched_fragments": 104, "total_fragments": 1192, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Maribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001020565.1", "gtdb_species": "s__Maribacter thermophilus", "ani": 76.2668, "matched_fragments": 102, "total_fragments": 1192, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Maribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014596745.1", "gtdb_species": "s__Maribacter_A sp014596745", "ani": 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