{ "type": "genome", "identifier": "GCA_024643425.1", "organism": "Flavobacteriaceae bacterium", "title": "Flavobacteriaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Handley Lab, University of Auckland", "publication": [ {} ], "properties": { "assembly_accession": "GCA_024643425.1", "bioproject": "PRJNA668816", "biosample": "SAMN19290138", "wgs_master": "JAHEMY000000000.1", "refseq_category": "na", "taxid": "1871037", "species_taxid": "1871037", "organism_name": "Flavobacteriaceae bacterium", "infraspecific_name": "", "isolate": "Ww86", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/08/12", "asm_name": "ASM2464342v1", "submitter": "Handley Lab, University of Auckland", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/643/425/GCA_024643425.1_ASM2464342v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-08-12", "dateModified": "2022-08-12", "datePublished": "2022-08-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacteriaceae bacterium" ], "sample_taxid": [ "1871037" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "New Zealand: Waiwera River, Auckland" ], "sample_host_location_id": [], "data_size": "0.789 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2743006", "Number of Sequences": "201", "Longest Sequences (bp)": "85394", "N50 (bp)": "24741", "Gap Ratio (%)": "0.033904", "GCcontent (%)": "39.7", "Number of CDSs": "2337", "Average Protein Length": "327.0", "Coding Ratio (%)": "83.6", "Number of rRNAs": "1", "Number of tRNAs": "33", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halomarinibacterium sedimenti", "strain": "strain=CAU 1614", "accession": "GCA_019312585.1", "taxid": 2857106, "species_taxid": 2857106, "relation_to_type": "type", "validated": true, "ani": 77.5087, "matched_fragments": 216, "total_fragments": 818, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Constantimarinum furrinae", "strain": "strain=ALE3EI", "accession": "GCA_014295415.1", "taxid": 2562285, "species_taxid": 2562285, "relation_to_type": "type", "validated": true, "ani": 77.1818, "matched_fragments": 93, "total_fragments": 818, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ulvibacter antarcticus", "strain": "strain=DSM 23424", "accession": "GCA_003688405.1", "taxid": 442714, "species_taxid": 442714, "relation_to_type": "type", "validated": true, "ani": 76.9911, "matched_fragments": 85, "total_fragments": 818, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ulvibacter litoralis", "strain": "strain=DSM 16195", "accession": "GCA_900102055.1", "taxid": 227084, "species_taxid": 227084, "relation_to_type": "type", "validated": true, "ani": 76.9883, "matched_fragments": 116, "total_fragments": 818, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ulvibacter litoralis", "strain": "strain=KCTC 12104", "accession": "GCA_014651275.1", "taxid": 227084, "species_taxid": 227084, "relation_to_type": "type", "validated": true, "ani": 76.934, "matched_fragments": 118, "total_fragments": 818, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aestuariibaculum suncheonense", "strain": "strain=SC17", "accession": "GCA_014596935.1", "taxid": 1028745, "species_taxid": 1028745, "relation_to_type": "type", "validated": true, "ani": 76.8586, "matched_fragments": 50, "total_fragments": 818, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cochleicola gelatinilyticus", "strain": "strain=LPB0005", "accession": "GCA_001637325.1", "taxid": 1763537, "species_taxid": 1763537, "relation_to_type": "type", "validated": true, "ani": 76.8126, "matched_fragments": 110, "total_fragments": 818, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera neustonica", "strain": "strain=JCM19743", "accession": "GCA_002895005.1", "taxid": 1445657, "species_taxid": 1445657, "relation_to_type": "type", "validated": true, "ani": 76.7345, "matched_fragments": 54, "total_fragments": 818, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aequorivita sublithincola", "strain": "strain=DSM 14238", "accession": "GCA_000265385.1", "taxid": 101385, "species_taxid": 101385, "relation_to_type": "type", "validated": true, "ani": 76.6349, "matched_fragments": 84, "total_fragments": 818, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter pacificus", "strain": "strain=H164", "accession": "GCA_008033385.1", "taxid": 2599389, "species_taxid": 2599389, "relation_to_type": "type", "validated": true, "ani": 76.4775, "matched_fragments": 51, "total_fragments": 818, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lacinutrix himadriensis", "strain": "strain=E4-9a", "accession": "GCA_001418105.1", "taxid": 641549, "species_taxid": 641549, "relation_to_type": "type", "validated": true, "ani": 76.2003, "matched_fragments": 51, "total_fragments": 818, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kordia periserrulae", "strain": "strain=DSM 25731", "accession": "GCA_003054265.1", "taxid": 701523, "species_taxid": 701523, "relation_to_type": "type", "validated": true, "ani": 76.0523, "matched_fragments": 60, "total_fragments": 818, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_002694465.1", "gtdb_species": "s__IN17 sp002694465", "ani": 77.6378, "matched_fragments": 205, "total_fragments": 818, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__IN17", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.93", "min_intra_species_ani": "99.93", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002707025.1", "gtdb_species": "s__IN17 sp002707025", "ani": 77.2381, "matched_fragments": 184, "total_fragments": 818, "gtdb_taxonomy": 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