{ "type": "genome", "identifier": "GCA_024643705.1", "organism": "Caldilineaceae bacterium", "title": "Caldilineaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Handley Lab, University of Auckland", "publication": [ {} ], "properties": { "assembly_accession": "GCA_024643705.1", "bioproject": "PRJNA668816", "biosample": "SAMN19290125", "wgs_master": "JAHEML000000000.1", "refseq_category": "na", "taxid": "2614250", "species_taxid": "2614250", "organism_name": "Caldilineaceae bacterium", "infraspecific_name": "", "isolate": "Ww71", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/08/12", "asm_name": "ASM2464370v1", "submitter": "Handley Lab, University of Auckland", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/643/705/GCA_024643705.1_ASM2464370v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-08-12", "dateModified": "2022-08-12", "datePublished": "2022-08-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Caldilineaceae bacterium" ], "sample_taxid": [ "2614250" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "New Zealand: Waiwera River, Auckland" ], "sample_host_location_id": [], "data_size": "1.396 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.37, "contamination": 0.98, "strain_heterogeneity": 50.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4831827", "Number of Sequences": "967", "Longest Sequences (bp)": "25586", "N50 (bp)": "5998", "Gap Ratio (%)": "0.030175", "GCcontent (%)": "57.5", "Number of CDSs": "3167", "Average Protein Length": "317.5", "Coding Ratio (%)": "62.4", "Number of rRNAs": "0", "Number of tRNAs": "33", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Litorilinea aerophila", "strain": "strain=ATCC BAA-2444", "accession": "GCA_006569185.2", "taxid": 1204385, "species_taxid": 1204385, "relation_to_type": "type", "validated": true, "ani": 75.9933, "matched_fragments": 129, "total_fragments": 1092, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.37, "contamination": 0.98, "strain_heterogeneity": 50.0 }, "gtdb_result": [ { "accession": "GCA_016199425.1", "gtdb_species": "s__JACQGT01 sp016199425", "ani": 78.6679, "matched_fragments": 334, "total_fragments": 1092, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__JACQGT01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018003515.1", "gtdb_species": "s__JAGNDO01 sp018003515", "ani": 76.5647, "matched_fragments": 122, "total_fragments": 1092, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__JAGNDO01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.87", "min_intra_species_ani": "99.85", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_015494005.1", "gtdb_species": "s__S144-5 sp015494005", "ani": 76.3105, "matched_fragments": 77, "total_fragments": 1092, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__S144-5", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006569185.1", "gtdb_species": "s__Litorilinea aerophila", "ani": 76.0063, "matched_fragments": 128, "total_fragments": 1092, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__Litorilinea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.85", "min_intra_species_ani": "99.85", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_003451595.1", "gtdb_species": "s__Caldilinea sp003451595", "ani": 75.9284, "matched_fragments": 57, "total_fragments": 1092, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__Caldilinea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.85", "min_intra_species_ani": "99.85", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_011523365.1", "gtdb_species": "s__Bin5 sp011523365", "ani": 75.7926, "matched_fragments": 53, "total_fragments": 1092, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__Bin5", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016124945.1", "gtdb_species": "s__RI-153 sp016124945", "ani": 75.7637, "matched_fragments": 120, "total_fragments": 1092, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__RI-153", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016861025.1", "gtdb_species": "s__Caldilinea sp016861025", "ani": 75.6995, "matched_fragments": 50, "total_fragments": 1092, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__Caldilinea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009840225.1", "gtdb_species": "s__Bin5 sp009840225", "ani": 75.4171, "matched_fragments": 61, "total_fragments": 1092, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__Bin5", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.63", "min_intra_species_ani": "95.35", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.84", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.302, "cell_length": -0.155, "doubling_h": 0.906, "growth_tmp": 54.666, "optimum_tmp": 55.0, "optimum_ph": 7.5, "genome_size": 5143605.4, "gc_content": 58.8, "coding_genes": 4056.0, "rRNA16S_genes": 2.0, "tRNA_genes": 47.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.333, "anaerobic_respiration": 0.333, "aerobic_respiration": 0.333, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Chloroflexota", "c__Anaerolineae", "o__Caldilineales", "f__Caldilineaceae", "g__JACQGT01", "s__JACQGT01 sp024643705" ], "_genome_taxon": [ "Caldilineaceae", "bacterium", "d__Bacteria", "p__Chloroflexota", "c__Anaerolineae", "o__Caldilineales", "f__Caldilineaceae", "g__JACQGT01", "s__JACQGT01 sp024643705", "Bacteria", "Chloroflexota", "Anaerolineae", "Caldilineales", "Caldilineaceae", "JACQGT01", "JACQGT01", "sp024643705" ], "_meo": [ { "id": "MEO_0000087", "label": "estuary" }, { "id": "MEO_0000066", "label": "sediment" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }