{ "type": "genome", "identifier": "GCA_024643855.1", "organism": "Planktomarina sp.", "title": "Planktomarina sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Handley Lab, University of Auckland", "publication": [ {} ], "properties": { "assembly_accession": "GCA_024643855.1", "bioproject": "PRJNA668816", "biosample": "SAMN19290117", "wgs_master": "JAHEMD000000000.1", "refseq_category": "na", "taxid": "2024851", "species_taxid": "2024851", "organism_name": "Planktomarina sp.", "infraspecific_name": "", "isolate": "Ww649", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/08/12", "asm_name": "ASM2464385v1", "submitter": "Handley Lab, University of Auckland", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/643/855/GCA_024643855.1_ASM2464385v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-08-12", "dateModified": "2022-08-12", "datePublished": "2022-08-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Planktomarina sp." ], "sample_taxid": [ "2024851" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "New Zealand: Waiwera River, Auckland" ], "sample_host_location_id": [], "data_size": "0.680 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2380434", "Number of Sequences": "106", "Longest Sequences (bp)": "148728", "N50 (bp)": "49476", "Gap Ratio (%)": "0.121827", "GCcontent (%)": "55.3", "Number of CDSs": "2217", "Average Protein Length": "317.3", "Coding Ratio (%)": "88.6", "Number of rRNAs": "0", "Number of tRNAs": "30", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Planktomarina temperata", "strain": "strain=RCA23", "accession": "GCA_000738435.1", "taxid": 1284658, "species_taxid": 1284658, "relation_to_type": "type", "validated": true, "ani": 98.9213, "matched_fragments": 722, "total_fragments": 738, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Nereida ignava", "strain": "strain=CECT 5292", "accession": "GCA_001049735.1", "taxid": 282199, "species_taxid": 282199, "relation_to_type": "type", "validated": true, "ani": 76.3358, "matched_fragments": 52, "total_fragments": 738, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nereida ignava", "strain": "strain=DSM 16309", "accession": "GCA_900114125.1", "taxid": 282199, 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"below_threshold" }, { "organism_name": "Tritonibacter multivorans", "strain": "strain=CECT 7557", "accession": "GCA_001458415.1", "taxid": 928856, "species_taxid": 928856, "relation_to_type": "type", "validated": true, "ani": 75.8308, "matched_fragments": 82, "total_fragments": 738, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leisingera methylohalidivorans", "strain": "strain=DSM 14336; MB2", "accession": "GCA_000511355.1", "taxid": 133924, "species_taxid": 133924, "relation_to_type": "type", "validated": true, "ani": 75.8279, "matched_fragments": 59, "total_fragments": 738, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagivirga sediminicola", "strain": "strain=BH-SD19", "accession": "GCA_003072125.1", "taxid": 2170575, "species_taxid": 2170575, "relation_to_type": "type", "validated": true, "ani": 75.8172, "matched_fragments": 55, "total_fragments": 738, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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