{ "type": "genome", "identifier": "GCA_024644085.1", "organism": "Rhodopirellula sp.", "title": "Rhodopirellula sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Handley Lab, University of Auckland", "publication": [ {} ], "properties": { "assembly_accession": "GCA_024644085.1", "bioproject": "PRJNA668816", "biosample": "SAMN19290106", "wgs_master": "JAHELS000000000.1", "refseq_category": "na", "taxid": "2024855", "species_taxid": "2024855", "organism_name": "Rhodopirellula sp.", "infraspecific_name": "", "isolate": "Ww632", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/08/12", "asm_name": "ASM2464408v1", "submitter": "Handley Lab, University of Auckland", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/644/085/GCA_024644085.1_ASM2464408v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-08-12", "dateModified": "2022-08-12", "datePublished": "2022-08-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Rhodopirellula sp." ], "sample_taxid": [ "2024855" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "New Zealand: Waiwera River, Auckland" ], "sample_host_location_id": [], "data_size": "1.967 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 87.5, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "6898199", "Number of Sequences": "468", "Longest Sequences (bp)": "105479", "N50 (bp)": "23966", "Gap Ratio (%)": "0.050158", "GCcontent (%)": "57.6", "Number of CDSs": "4809", "Average Protein Length": "379.4", "Coding Ratio (%)": "79.4", "Number of rRNAs": "1", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rubripirellula lacrimiformis", "strain": "strain=K22.7", "accession": "GCA_007741535.1", "taxid": 1930273, "species_taxid": 1930273, "relation_to_type": "type", "validated": true, "ani": 76.2753, "matched_fragments": 191, "total_fragments": 2071, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubripirellula tenax", "strain": "strain=Poly51", "accession": "GCA_007860125.1", "taxid": 2528015, "species_taxid": 2528015, "relation_to_type": "type", "validated": true, "ani": 76.1719, "matched_fragments": 171, "total_fragments": 2071, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubripirellula amarantea", "strain": "strain=Pla22", "accession": "GCA_007859865.1", "taxid": 2527999, "species_taxid": 2527999, "relation_to_type": "type", "validated": true, "ani": 76.1248, "matched_fragments": 115, "total_fragments": 2071, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stieleria neptunia", "strain": "strain=Enr13", "accession": "GCA_007754155.1", "taxid": 2527979, "species_taxid": 2527979, "relation_to_type": "type", "validated": true, "ani": 76.0532, "matched_fragments": 203, "total_fragments": 2071, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodopirellula islandica", "strain": "strain=K833", "accession": "GCA_001027925.1", "taxid": 595434, "species_taxid": 595434, "relation_to_type": "type", "validated": true, "ani": 76.0468, "matched_fragments": 106, "total_fragments": 2071, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stieleria maiorica", "strain": "strain=Mal15", "accession": "GCA_008035925.1", "taxid": 2795974, "species_taxid": 2795974, "relation_to_type": "type", "validated": true, "ani": 76.0047, "matched_fragments": 203, "total_fragments": 2071, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseimaritima ulvae", "strain": "strain=DSM 25454", "accession": "GCA_001642915.1", "taxid": 980254, "species_taxid": 980254, "relation_to_type": "type", "validated": true, "ani": 76.0037, "matched_fragments": 96, "total_fragments": 2071, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseimaritima ulvae", "strain": "strain=UC8", "accession": "GCA_008065135.1", "taxid": 980254, "species_taxid": 980254, "relation_to_type": "type", "validated": true, "ani": 76.0026, "matched_fragments": 94, "total_fragments": 2071, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stieleria varia", "strain": "strain=Pla52n", "accession": "GCA_007860045.1", "taxid": 2528005, "species_taxid": 2528005, "relation_to_type": "type", "validated": true, "ani": 75.972, "matched_fragments": 151, "total_fragments": 2071, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Crateriforma spongiae", "strain": "strain=JC647", "accession": "GCA_012290005.1", "taxid": 2724528, "species_taxid": 2724528, "relation_to_type": "type", "validated": true, "ani": 75.9258, "matched_fragments": 143, "total_fragments": 2071, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodopirellula maiorica", "strain": "strain=SM1", "accession": "GCA_000346295.1", "taxid": 1265734, "species_taxid": 1265734, "relation_to_type": "type", "validated": true, "ani": 75.722, "matched_fragments": 141, "total_fragments": 2071, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 87.5, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_002689655.1", "gtdb_species": "s__Rubripirellula sp002689655", "ani": 76.5434, "matched_fragments": 115, "total_fragments": 2071, 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