{ "type": "genome", "identifier": "GCA_024644435.1", "organism": "Actinomycetia bacterium", "title": "Actinomycetia bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Handley Lab, University of Auckland", "publication": [ {} ], "properties": { "assembly_accession": "GCA_024644435.1", "bioproject": "PRJNA668816", "biosample": "SAMN19290087", "wgs_master": "JAHEKZ000000000.1", "refseq_category": "na", "taxid": "1883427", "species_taxid": "1883427", "organism_name": "Actinomycetia bacterium", "infraspecific_name": "", "isolate": "Ww60", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/08/12", "asm_name": "ASM2464443v1", "submitter": "Handley Lab, University of Auckland", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/644/435/GCA_024644435.1_ASM2464443v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-08-12", "dateModified": "2022-08-12", "datePublished": "2022-08-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinomycetia bacterium" ], "sample_taxid": [ "1883427" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "New Zealand: Waiwera River, Auckland" ], "sample_host_location_id": [], "data_size": "0.703 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 88.73, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2534486", "Number of Sequences": "110", "Longest Sequences (bp)": "117211", "N50 (bp)": "43568", "Gap Ratio (%)": "0.169660", "GCcontent (%)": "66.8", "Number of CDSs": "2369", "Average Protein Length": "315.7", "Coding Ratio (%)": "88.5", "Number of rRNAs": "3", "Number of tRNAs": "38", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Motilibacter aurantiacus", "strain": "strain=K478", "accession": "GCA_011250645.1", "taxid": 2714955, "species_taxid": 2714955, "relation_to_type": "type", "validated": true, "ani": 77.1454, "matched_fragments": 123, "total_fragments": 792, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Motilibacter peucedani", "strain": "strain=RP-AC37", "accession": "GCA_003634695.1", "taxid": 598650, "species_taxid": 598650, "relation_to_type": "type", "validated": true, "ani": 77.0649, "matched_fragments": 152, "total_fragments": 792, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Georgenia wutianyii", "strain": "strain=Z294", "accession": "GCA_006349365.1", "taxid": 2585135, "species_taxid": 2585135, "relation_to_type": "type", "validated": true, "ani": 77.014, "matched_fragments": 100, "total_fragments": 792, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas palmilytica", "strain": "strain=EW123", "accession": "GCA_021590045.1", "taxid": 2608402, "species_taxid": 2608402, "relation_to_type": "type", "validated": true, "ani": 76.9713, "matched_fragments": 98, "total_fragments": 792, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces lonarensis", "strain": "strain=NCL716", "accession": "GCA_012033735.1", "taxid": 700599, "species_taxid": 700599, "relation_to_type": "type", "validated": true, "ani": 76.7338, "matched_fragments": 111, "total_fragments": 792, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marmoricola aequoreus", "strain": "strain=NRRL B-24464", "accession": "GCA_000720335.1", "taxid": 397278, "species_taxid": 397278, "relation_to_type": "type", "validated": true, "ani": 76.6965, "matched_fragments": 149, "total_fragments": 792, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerisporangium rubeum", "strain": "strain=DSM 44936", "accession": "GCA_014207705.1", "taxid": 321317, "species_taxid": 321317, "relation_to_type": "type", "validated": true, "ani": 76.6746, "matched_fragments": 129, "total_fragments": 792, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces griseoruber", "strain": "strain=NRRL B-1818", "accession": "GCA_001418585.1", "taxid": 1943, "species_taxid": 1943, "relation_to_type": "type", "validated": true, "ani": 76.6711, "matched_fragments": 125, "total_fragments": 792, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Georgenia yuyongxinii", "strain": "strain=Z443", "accession": "GCA_006352065.1", "taxid": 2589797, "species_taxid": 2589797, "relation_to_type": "type", "validated": true, "ani": 76.6594, "matched_fragments": 93, "total_fragments": 792, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces griseoruber", "strain": "strain=DSM 40281", "accession": "GCA_001514205.1", "taxid": 1943, "species_taxid": 1943, "relation_to_type": "type", "validated": true, "ani": 76.6294, "matched_fragments": 135, "total_fragments": 792, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces griseolus", "strain": "strain=NRRL B-2925", "accession": "GCA_000721185.1", "taxid": 1909, "species_taxid": 1909, "relation_to_type": "type", "validated": true, "ani": 76.5976, "matched_fragments": 119, "total_fragments": 792, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Beutenbergia cavernae", "strain": "strain=DSM 12333", "accession": "GCA_000023105.1", "taxid": 84757, "species_taxid": 84757, "relation_to_type": "type", "validated": true, "ani": 76.5967, "matched_fragments": 94, "total_fragments": 792, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces recifensis", "strain": "strain=NRRL B-3811", "accession": "GCA_002154615.1", "taxid": 67355, "species_taxid": 67355, "relation_to_type": "type", "validated": true, "ani": 76.5745, "matched_fragments": 123, "total_fragments": 792, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella alkaliphila", "strain": "strain=KCTC 19222", "accession": "GCA_001005145.1", "taxid": 419479, "species_taxid": 419479, "relation_to_type": "type", "validated": true, "ani": 76.5452, "matched_fragments": 161, "total_fragments": 792, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella alkaliphila", "strain": "strain=DSM 45079", "accession": "GCA_900105925.1", "taxid": 419479, "species_taxid": 419479, "relation_to_type": "type", "validated": true, "ani": 76.5434, "matched_fragments": 162, "total_fragments": 792, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces sennicomposti", "strain": "strain=RCPT1-4", "accession": "GCA_019890635.1", "taxid": 2873384, "species_taxid": 2873384, "relation_to_type": "type", "validated": true, "ani": 76.4657, "matched_fragments": 134, "total_fragments": 792, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haloactinopolyspora alba", "strain": "strain=YIM 93246", "accession": "GCA_004138525.1", "taxid": 648780, "species_taxid": 648780, "relation_to_type": "type", "validated": true, "ani": 76.4096, "matched_fragments": 123, "total_fragments": 792, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella muralis", "strain": "strain=DSM 45357", "accession": "GCA_001270745.1", "taxid": 702383, "species_taxid": 702383, "relation_to_type": "type", "validated": true, "ani": 76.3722, "matched_fragments": 152, "total_fragments": 792, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces genisteinicus", "strain": "strain=CRPJ-33", "accession": "GCA_014489615.1", "taxid": 2768068, "species_taxid": 2768068, "relation_to_type": "type", "validated": true, "ani": 76.35, "matched_fragments": 148, "total_fragments": 792, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces capillispiralis", "strain": "strain=JCM 5075", "accession": "GCA_014656315.1", "taxid": 68182, "species_taxid": 68182, "relation_to_type": "type", "validated": true, "ani": 76.3466, "matched_fragments": 142, "total_fragments": 792, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea roseoviolacea subsp. carminata", "strain": "strain=DSM 44170", "accession": "GCA_024172185.1", "taxid": 160689, "species_taxid": 103837, "relation_to_type": "type", "validated": true, "ani": 76.3196, "matched_fragments": 164, "total_fragments": 792, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spongiactinospora rosea", "strain": "strain=LHW63015", "accession": "GCA_003315795.1", "taxid": 2248750, "species_taxid": 2248750, "relation_to_type": "type", "validated": true, "ani": 76.3173, "matched_fragments": 124, "total_fragments": 792, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella alba", "strain": "strain=DSM 45237", "accession": "GCA_900106035.1", "taxid": 561176, "species_taxid": 561176, "relation_to_type": "type", "validated": true, "ani": 76.3162, "matched_fragments": 184, "total_fragments": 792, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura spongiicola", "strain": "strain=LHW52907", "accession": "GCA_003432485.1", "taxid": 2303421, "species_taxid": 2303421, "relation_to_type": "type", "validated": true, "ani": 76.2837, "matched_fragments": 112, "total_fragments": 792, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spongiactinospora gelatinilytica", "strain": "strain=7K107", "accession": "GCA_003236385.1", "taxid": 2666298, "species_taxid": 2666298, "relation_to_type": "type", "validated": true, "ani": 76.2769, "matched_fragments": 118, "total_fragments": 792, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces cellostaticus", "strain": "strain=DSM 40189", "accession": "GCA_001513965.1", "taxid": 67285, "species_taxid": 67285, "relation_to_type": "type", "validated": true, "ani": 76.2634, "matched_fragments": 139, "total_fragments": 792, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces termitum", "strain": "strain=JCM 4518", "accession": "GCA_014650175.1", "taxid": 67368, "species_taxid": 67368, "relation_to_type": "type", "validated": true, "ani": 76.2426, "matched_fragments": 137, "total_fragments": 792, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces humi", "strain": "strain=MUSC 119", "accession": "GCA_001005085.2", "taxid": 1428620, 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