{
    "type": "genome",
    "identifier": "GCA_024644635.1",
    "organism": "Geobacteraceae bacterium",
    "title": "Geobacteraceae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Handley Lab, University of Auckland",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_024644635.1",
        "bioproject": "PRJNA668816",
        "biosample": "SAMN19289992",
        "wgs_master": "JAHEHI000000000.1",
        "refseq_category": "na",
        "taxid": "2282154",
        "species_taxid": "2282154",
        "organism_name": "Geobacteraceae bacterium",
        "infraspecific_name": "",
        "isolate": "Ww447",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/08/12",
        "asm_name": "ASM2464463v1",
        "submitter": "Handley Lab, University of Auckland",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/644/635/GCA_024644635.1_ASM2464463v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-08-12",
    "dateModified": "2022-08-12",
    "datePublished": "2022-08-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Geobacteraceae bacterium"
        ],
        "sample_taxid": [
            "2282154"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "New Zealand: Waiwera River, Auckland"
        ],
        "sample_host_location_id": [],
        "data_size": "0.847 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 87.5,
        "contamination": 25.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2924364",
        "Number of Sequences": "450",
        "Longest Sequences (bp)": "112924",
        "N50 (bp)": "9040",
        "Gap Ratio (%)": "0.119684",
        "GCcontent (%)": "55.4",
        "Number of CDSs": "2240",
        "Average Protein Length": "304.8",
        "Coding Ratio (%)": "70.0",
        "Number of rRNAs": "5",
        "Number of tRNAs": "43",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Desulfuromonas acetexigens",
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                "accession": "GCA_007051125.1",
                "taxid": 38815,
                "species_taxid": 38815,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 64,
                "total_fragments": 731,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfuromonas acetexigens",
                "strain": "",
                "accession": "GCA_900111775.1",
                "taxid": 38815,
                "species_taxid": 38815,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2622,
                "matched_fragments": 62,
                "total_fragments": 731,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Geothermobacter ehrlichii",
                "strain": "strain=SS015",
                "accession": "GCA_008124615.1",
                "taxid": 213224,
                "species_taxid": 213224,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2268,
                "matched_fragments": 85,
                "total_fragments": 731,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desulfuromonas versatilis",
                "strain": "strain=NIT-T3",
                "accession": "GCA_019704135.1",
                "taxid": 2802975,
                "species_taxid": 2802975,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1435,
                "matched_fragments": 121,
                "total_fragments": 731,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Geoalkalibacter halelectricus",
                "strain": "strain=SAP-1",
                "accession": "GCA_025263685.1",
                "taxid": 2847045,
                "species_taxid": 2847045,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7741,
                "matched_fragments": 55,
                "total_fragments": 731,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Geothermobacter hydrogeniphilus",
                "strain": "strain=EPR-M",
                "accession": "GCA_002093115.1",
                "taxid": 1969733,
                "species_taxid": 1969733,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6248,
                "matched_fragments": 91,
                "total_fragments": 731,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Malonomonas rubra",
                "strain": "strain=DSM 5091",
                "accession": "GCA_900142125.1",
                "taxid": 57040,
                "species_taxid": 57040,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5354,
                "matched_fragments": 72,
                "total_fragments": 731,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 87.5,
            "contamination": 25.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_006226895.1",
                "gtdb_species": "s__M0040 sp006226895",
                "ani": 78.0044,
                "matched_fragments": 94,
                "total_fragments": 731,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Desulfuromonadales;f__BM103;g__M0040",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_012974435.1",
                "gtdb_species": "s__M0040 sp012974435",
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                "total_fragments": 731,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Desulfuromonadales;f__BM103;g__M0040",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_014860225.1",
                "gtdb_species": "s__M0040 sp014860225",
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                "matched_fragments": 185,
                "total_fragments": 731,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Desulfuromonadales;f__BM103;g__M0040",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900111775.1",
                "gtdb_species": "s__Trichloromonas acetexigens",
                "ani": 77.3702,
                "matched_fragments": 63,
                "total_fragments": 731,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Desulfuromonadales;f__Trichloromonadaceae;g__Trichloromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_008124615.1",
                "gtdb_species": "s__Geothermobacter ehrlichii",
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                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Desulfuromonadales;f__Geothermobacteraceae;g__Geothermobacter",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_009731355.2",
                "gtdb_species": "s__SZUA-540 sp009731355",
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                "matched_fragments": 56,
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                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Desulfuromonadales;f__SZUA-540;g__SZUA-540",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002869615.1",
                "gtdb_species": "s__BM707 sp002869615",
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                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Desulfuromonadales;f__UBA2294;g__BM707",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
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            },
            {
                "accession": "GCA_002868845.1",
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            },
            {
                "accession": "GCA_002868905.1",
                "gtdb_species": "s__BM304 sp002868905",
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                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Desulfuromonadales;f__Geothermobacteraceae;g__BM304",
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            },
            {
                "accession": "GCF_002093115.1",
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            },
            {
                "accession": "GCA_014860175.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Desulfuromonadales;f__JACZKF01;g__JACZKF01",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.351,
        "cell_length": 0.204,
        "doubling_h": 0.943,
        "growth_tmp": 30.647,
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        "range_salinity": 0.666,
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        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
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        "bacillus_cell_shape": 0.923,
        "coccus_cell_shape": 0.0,
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        "coccobacillus_cell_shape": 0.0,
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    "_gtdb_taxon": [
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        "p__Desulfobacterota",
        "c__Desulfuromonadia",
        "o__Desulfuromonadales",
        "f__BM103",
        "g__JAFDBW01",
        "s__"
    ],
    "_genome_taxon": [
        "Geobacteraceae",
        "bacterium",
        "d__Bacteria",
        "p__Desulfobacterota",
        "c__Desulfuromonadia",
        "o__Desulfuromonadales",
        "f__BM103",
        "g__JAFDBW01",
        "s__",
        "Bacteria",
        "Desulfobacterota",
        "Desulfuromonadia",
        "Desulfuromonadales",
        "BM103",
        "JAFDBW01",
        "s",
        "",
        ""
    ],
    "_meo": [
        {
            "id": "MEO_0000087",
            "label": "estuary"
        },
        {
            "id": "MEO_0000066",
            "label": "sediment"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}