{
    "type": "genome",
    "identifier": "GCA_024645045.1",
    "organism": "Sphingobacteriaceae bacterium",
    "title": "Sphingobacteriaceae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Handley Lab, University of Auckland",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_024645045.1",
        "bioproject": "PRJNA668816",
        "biosample": "SAMN19289972",
        "wgs_master": "JAHEGO000000000.1",
        "refseq_category": "na",
        "taxid": "2021370",
        "species_taxid": "2021370",
        "organism_name": "Sphingobacteriaceae bacterium",
        "infraspecific_name": "",
        "isolate": "Ww41",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/08/12",
        "asm_name": "ASM2464504v1",
        "submitter": "Handley Lab, University of Auckland",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/645/045/GCA_024645045.1_ASM2464504v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-08-12",
    "dateModified": "2022-08-12",
    "datePublished": "2022-08-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Sphingobacteriaceae bacterium"
        ],
        "sample_taxid": [
            "2021370"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "New Zealand: Waiwera River, Auckland"
        ],
        "sample_host_location_id": [],
        "data_size": "0.515 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 83.33,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1830412",
        "Number of Sequences": "70",
        "Longest Sequences (bp)": "194679",
        "N50 (bp)": "53453",
        "Gap Ratio (%)": "0.071022",
        "GCcontent (%)": "34.0",
        "Number of CDSs": "1543",
        "Average Protein Length": "357.5",
        "Coding Ratio (%)": "90.4",
        "Number of rRNAs": "0",
        "Number of tRNAs": "23",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "species_taxid": 2679964,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pedobacter polaris",
                "strain": "strain=RP-3-22",
                "accession": "GCA_005116505.1",
                "taxid": 2571273,
                "species_taxid": 2571273,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 56,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pedobacter glucosidilyticus",
                "strain": "strain=DSM 23534",
                "accession": "GCA_000425145.1",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 76.314,
                "matched_fragments": 50,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pedobacter frigiditerrae",
                "strain": "strain=RP-1-13",
                "accession": "GCA_004331645.1",
                "taxid": 2530452,
                "species_taxid": 2530452,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2663,
                "matched_fragments": 60,
                "total_fragments": 573,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pedobacter aquae",
                "strain": "strain=CJ43",
                "accession": "GCA_008195825.1",
                "taxid": 2605747,
                "species_taxid": 2605747,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2341,
                "matched_fragments": 53,
                "total_fragments": 573,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pedobacter mucosus",
                "strain": "strain=Q8-18",
                "accession": "GCA_022200785.1",
                "taxid": 2895286,
                "species_taxid": 2895286,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.994,
                "matched_fragments": 50,
                "total_fragments": 573,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pedobacter puniceum",
                "strain": "strain=HX-22-1",
                "accession": "GCA_009674685.1",
                "taxid": 2666136,
                "species_taxid": 2666136,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9905,
                "matched_fragments": 53,
                "total_fragments": 573,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pedobacter cryotolerans",
                "strain": "strain=AR-2-6",
                "accession": "GCA_005116475.1",
                "taxid": 2571270,
                "species_taxid": 2571270,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9771,
                "matched_fragments": 50,
                "total_fragments": 573,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pedobacter nototheniae",
                "strain": "strain=36B243",
                "accession": "GCA_004335085.1",
                "taxid": 2488994,
                "species_taxid": 2488994,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8415,
                "matched_fragments": 53,
                "total_fragments": 573,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 83.33,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCA_903828245.1",
                "gtdb_species": "s__CAIKLP01 sp903828245",
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                "matched_fragments": 410,
                "total_fragments": 573,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__CAIKLP01;g__CAIKLP01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903838995.1",
                "gtdb_species": "s__CAIKLP01 sp903838995",
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                "matched_fragments": 401,
                "total_fragments": 573,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__CAIKLP01;g__CAIKLP01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.32",
                "min_intra_species_ani": "98.83",
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                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_903951325.1",
                "gtdb_species": "s__CAIKLP01 sp903951325",
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                "matched_fragments": 372,
                "total_fragments": 573,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__CAIKLP01;g__CAIKLP01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.19",
                "min_intra_species_ani": "99.15",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_903958995.1",
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                "matched_fragments": 107,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__CAIKLP01;g__CAJBVG01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004331645.1",
                "gtdb_species": "s__Pedobacter sp004331645",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Pedobacter",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_004335085.1",
                "gtdb_species": "s__Pedobacter nototheniae",
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                "mean_intra_species_ani": "98.28",
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                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCF_000799115.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Pelobium",
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                "mean_intra_species_ani": "97.72",
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.296,
        "cell_length": 0.213,
        "doubling_h": null,
        "growth_tmp": 26.377,
        "optimum_tmp": 27.687,
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        "coding_genes": 4585.629,
        "rRNA16S_genes": 3.875,
        "tRNA_genes": 55.222,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.144,
        "range_salinity": null,
        "facultative_respiration": 0.09,
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        "aerobic_respiration": 0.909,
        "mesophilic_range_tmp": 0.857,
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        "bacillus_cell_shape": 0.978,
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        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
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    "_gtdb_taxon": [
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        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Sphingobacteriales",
        "f__Sphingobacteriaceae",
        "g__CAIKLP01",
        "s__CAIKLP01 sp024645045"
    ],
    "_genome_taxon": [
        "Sphingobacteriaceae",
        "bacterium",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Sphingobacteriales",
        "f__Sphingobacteriaceae",
        "g__CAIKLP01",
        "s__CAIKLP01 sp024645045",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Sphingobacteriales",
        "Sphingobacteriaceae",
        "CAIKLP01",
        "CAIKLP01",
        "sp024645045"
    ],
    "_meo": [
        {
            "id": "MEO_0000087",
            "label": "estuary"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}