{
    "type": "genome",
    "identifier": "GCA_024653965.1",
    "organism": "Rhodospirillales bacterium",
    "title": "Rhodospirillales bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Research Center of Biotechnology RAS",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_024653965.1",
        "bioproject": "PRJNA863616",
        "biosample": "SAMN30051708",
        "wgs_master": "JANLGW000000000.1",
        "refseq_category": "na",
        "taxid": "2026786",
        "species_taxid": "2026786",
        "organism_name": "Rhodospirillales bacterium",
        "infraspecific_name": "",
        "isolate": "P6-1",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/08/14",
        "asm_name": "ASM2465396v1",
        "submitter": "Research Center of Biotechnology RAS",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/653/965/GCA_024653965.1_ASM2465396v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-08-14",
    "dateModified": "2022-08-14",
    "datePublished": "2022-08-14",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Rhodospirillales bacterium"
        ],
        "sample_taxid": [
            "2026786"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Russia: Udmurt Republic"
        ],
        "sample_host_location_id": [],
        "data_size": "0.850 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2990654",
        "Number of Sequences": "153",
        "Longest Sequences (bp)": "123469",
        "N50 (bp)": "32865",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "56.6",
        "Number of CDSs": "2834",
        "Average Protein Length": "293.7",
        "Coding Ratio (%)": "83.5",
        "Number of rRNAs": "0",
        "Number of tRNAs": "46",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Magnetovibrio blakemorei",
                "strain": "strain=MV-1",
                "accession": "GCA_001746755.1",
                "taxid": 28181,
                "species_taxid": 28181,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9516,
                "matched_fragments": 319,
                "total_fragments": 923,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Varunaivibrio sulfuroxidans",
                "strain": "strain=DSM 101688",
                "accession": "GCA_004341725.1",
                "taxid": 1773489,
                "species_taxid": 1773489,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.404,
                "matched_fragments": 113,
                "total_fragments": 923,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseospirillum parvum",
                "strain": "strain=930I",
                "accession": "GCA_900100455.1",
                "taxid": 83401,
                "species_taxid": 83401,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.292,
                "matched_fragments": 67,
                "total_fragments": 923,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Caenispirillum salinarum",
                "strain": "strain=AK4",
                "accession": "GCA_000315795.1",
                "taxid": 859058,
                "species_taxid": 859058,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2656,
                "matched_fragments": 73,
                "total_fragments": 923,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Magnetospirillum magnetotacticum",
                "strain": "strain=MS-1",
                "accession": "GCA_000829825.1",
                "taxid": 188,
                "species_taxid": 188,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2403,
                "matched_fragments": 88,
                "total_fragments": 923,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Azospirillum formosense",
                "strain": "strain=CC-NFb-7",
                "accession": "GCA_013340925.1",
                "taxid": 861533,
                "species_taxid": 861533,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9479,
                "matched_fragments": 68,
                "total_fragments": 923,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Azospirillum thermophilum",
                "strain": "strain=CFH 70021",
                "accession": "GCA_003130795.1",
                "taxid": 2202148,
                "species_taxid": 2202148,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8238,
                "matched_fragments": 72,
                "total_fragments": 923,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thalassobaculum fulvum",
                "strain": "strain=KCTC 42651",
                "accession": "GCA_014652915.1",
                "taxid": 1633335,
                "species_taxid": 1633335,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.7603,
                "matched_fragments": 63,
                "total_fragments": 923,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Azospirillum griseum",
                "strain": "strain=L-25-5 w-1",
                "accession": "GCA_003966125.1",
                "taxid": 2496639,
                "species_taxid": 2496639,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.7017,
                "matched_fragments": 73,
                "total_fragments": 923,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Azospirillum soli",
                "strain": "strain=CC-LY788",
                "accession": "GCA_017876165.1",
                "taxid": 1304799,
                "species_taxid": 1304799,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.621,
                "matched_fragments": 72,
                "total_fragments": 923,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nisaea sediminum",
                "strain": "strain=NBU1469",
                "accession": "GCA_014904705.1",
                "taxid": 2775867,
                "species_taxid": 2775867,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.5851,
                "matched_fragments": 50,
                "total_fragments": 923,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_015231605.1",
                "gtdb_species": "s__JADGBG01 sp015231605",
                "ani": 78.3993,
                "matched_fragments": 281,
                "total_fragments": 923,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Magnetovibrionaceae;g__JADGBG01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.19",
                "min_intra_species_ani": "99.19",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001746755.1",
                "gtdb_species": "s__Magnetovibrio blakemorei",
                "ani": 77.9411,
                "matched_fragments": 320,
                "total_fragments": 923,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Magnetovibrionaceae;g__Magnetovibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016763255.1",
                "gtdb_species": "s__Magnetovibrio sp016763255",
                "ani": 77.1915,
                "matched_fragments": 150,
                "total_fragments": 923,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Magnetovibrionaceae;g__Magnetovibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002781745.1",
                "gtdb_species": "s__UBA1479 sp002781745",
                "ani": 76.2916,
                "matched_fragments": 90,
                "total_fragments": 923,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Casp-alpha2;g__UBA1479",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002401565.1",
                "gtdb_species": "s__Magnetovibrio sp002401565",
                "ani": 76.2791,
                "matched_fragments": 114,
                "total_fragments": 923,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Magnetovibrionaceae;g__Magnetovibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018671895.1",
                "gtdb_species": "s__JABHGV01 sp018671895",
                "ani": 76.2011,
                "matched_fragments": 67,
                "total_fragments": 923,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__2-02-FULL-58-16_A;g__JABHGV01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.83",
                "min_intra_species_ani": "99.79",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_902725215.1",
                "gtdb_species": "s__WMHbin7 sp902725215",
                "ani": 76.1757,
                "matched_fragments": 84,
                "total_fragments": 923,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__WMHbin7;g__WMHbin7",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002732845.1",
                "gtdb_species": "s__Magnetovibrio sp002732845",
                "ani": 76.1741,
                "matched_fragments": 111,
                "total_fragments": 923,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Magnetovibrionaceae;g__Magnetovibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002686255.1",
                "gtdb_species": "s__Casp-alpha2 sp002686255",
                "ani": 76.1686,
                "matched_fragments": 76,
                "total_fragments": 923,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Casp-alpha2;g__Casp-alpha2",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.76",
                "min_intra_species_ani": "99.74",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_016869515.1",
                "gtdb_species": "s__VGDZ01 sp016869515",
                "ani": 75.8689,
                "matched_fragments": 63,
                "total_fragments": 923,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__VGDZ01;f__VGDZ01;g__VGDZ01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002696205.1",
                "gtdb_species": "s__UBA1479 sp002696205",
                "ani": 75.8551,
                "matched_fragments": 73,
                "total_fragments": 923,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Casp-alpha2;g__UBA1479",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016763895.1",
                "gtdb_species": "s__Magnetovibrio sp016763895",
                "ani": 75.8291,
                "matched_fragments": 54,
                "total_fragments": 923,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Magnetovibrionaceae;g__Magnetovibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003119115.1",
                "gtdb_species": "s__Azospirillum sp003119115",
                "ani": 75.8135,
                "matched_fragments": 74,
                "total_fragments": 923,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Azospirillales;f__Azospirillaceae;g__Azospirillum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.55",
                "min_intra_species_ani": "95.10",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_018432935.1",
                "gtdb_species": "s__JAHDSF01 sp018432935",
                "ani": 75.7689,
                "matched_fragments": 58,
                "total_fragments": 923,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__JAHDSF01;g__JAHDSF01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014904705.1",
                "gtdb_species": "s__Nisaea sp014904705",
                "ani": 75.5851,
                "matched_fragments": 50,
                "total_fragments": 923,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Thalassobaculales;f__Thalassobaculaceae;g__Nisaea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_014859895.1",
                "gtdb_species": "s__JACZKS01 sp014859895",
                "ani": 75.526,
                "matched_fragments": 76,
                "total_fragments": 923,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__JAHDSF01;g__JACZKS01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016764335.1",
                "gtdb_species": "s__Magnetovibrio sp016764335",
                "ani": 75.42,
                "matched_fragments": 60,
                "total_fragments": 923,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodospirillales;f__Magnetovibrionaceae;g__Magnetovibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016215605.1",
                "gtdb_species": "s__Rhodopseudomonas palustris_L",
                "ani": 75.2518,
                "matched_fragments": 58,
                "total_fragments": 923,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Rhodopseudomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.149,
        "cell_length": 0.277,
        "doubling_h": 0.851,
        "growth_tmp": 29.223,
        "optimum_tmp": 29.873,
        "optimum_ph": 6.714,
        "genome_size": 4309033.9,
        "gc_content": 61.073,
        "coding_genes": 3753.536,
        "rRNA16S_genes": 4.275,
        "tRNA_genes": 58.848,
        "gram_stain": 0.0,
        "sporulation": 0.027,
        "motility": 0.719,
        "range_salinity": 0.444,
        "facultative_respiration": 0.083,
        "anaerobic_respiration": 0.064,
        "aerobic_respiration": 0.852,
        "mesophilic_range_tmp": 0.942,
        "thermophilic_range_tmp": 0.028,
        "psychrophilic_range_tmp": 0.028,
        "bacillus_cell_shape": 0.623,
        "coccus_cell_shape": 0.085,
        "filament_cell_shape": 0.008,
        "coccobacillus_cell_shape": 0.059,
        "vibrio_cell_shape": 0.017,
        "spiral_cell_shape": 0.205
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__Rhodospirillales_A",
        "f__Magnetovibrionaceae",
        "g__JANLGW01",
        "s__JANLGW01 sp024653965"
    ],
    "_genome_taxon": [
        "Rhodospirillales",
        "bacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__Rhodospirillales_A",
        "f__Magnetovibrionaceae",
        "g__JANLGW01",
        "s__JANLGW01 sp024653965",
        "Bacteria",
        "Pseudomonadota",
        "Alphaproteobacteria",
        "Rhodospirillales",
        "A",
        "Magnetovibrionaceae",
        "JANLGW01",
        "JANLGW01",
        "sp024653965"
    ],
    "_meo": [
        {
            "id": "MEO_0000366",
            "label": "ground water"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}