{
    "type": "genome",
    "identifier": "GCA_024654005.1",
    "organism": "Gemmatimonadaceae bacterium",
    "title": "Gemmatimonadaceae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Research Center of Biotechnology RAS",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_024654005.1",
        "bioproject": "PRJNA863616",
        "biosample": "SAMN30051709",
        "wgs_master": "JANLGX000000000.1",
        "refseq_category": "na",
        "taxid": "2026741",
        "species_taxid": "2026741",
        "organism_name": "Gemmatimonadaceae bacterium",
        "infraspecific_name": "",
        "isolate": "P6-2",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/08/14",
        "asm_name": "ASM2465400v1",
        "submitter": "Research Center of Biotechnology RAS",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/654/005/GCA_024654005.1_ASM2465400v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-08-14",
    "dateModified": "2022-08-14",
    "datePublished": "2022-08-14",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Gemmatimonadaceae bacterium"
        ],
        "sample_taxid": [
            "2026741"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Russia: Udmurt Republic"
        ],
        "sample_host_location_id": [],
        "data_size": "1.046 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 98.96,
        "contamination": 0.46,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3749252",
        "Number of Sequences": "523",
        "Longest Sequences (bp)": "50927",
        "N50 (bp)": "11634",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "66.2",
        "Number of CDSs": "3526",
        "Average Protein Length": "273.9",
        "Coding Ratio (%)": "77.3",
        "Number of rRNAs": "2",
        "Number of tRNAs": "54",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Gemmatirosa kalamazoonensis",
                "strain": "strain=KBS708",
                "accession": "GCA_000522985.1",
                "taxid": 861299,
                "species_taxid": 861299,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2764,
                "matched_fragments": 323,
                "total_fragments": 958,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gemmatimonas aurantiaca",
                "strain": "strain=T-27",
                "accession": "GCA_000010305.1",
                "taxid": 173480,
                "species_taxid": 173480,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5219,
                "matched_fragments": 85,
                "total_fragments": 958,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gemmatimonas phototrophica",
                "strain": "strain=AP64",
                "accession": "GCA_000695095.2",
                "taxid": 1379270,
                "species_taxid": 1379270,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4087,
                "matched_fragments": 72,
                "total_fragments": 958,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gemmatimonas groenlandica",
                "strain": "strain=TET16",
                "accession": "GCA_013004105.1",
                "taxid": 2732249,
                "species_taxid": 2732249,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3865,
                "matched_fragments": 107,
                "total_fragments": 958,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Longimicrobium terrae",
                "strain": "strain=CB-286315",
                "accession": "GCA_013000925.1",
                "taxid": 1639882,
                "species_taxid": 1639882,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9929,
                "matched_fragments": 112,
                "total_fragments": 958,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Longimicrobium terrae",
                "strain": "strain=DSM 29007",
                "accession": "GCA_014202995.1",
                "taxid": 1639882,
                "species_taxid": 1639882,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9688,
                "matched_fragments": 109,
                "total_fragments": 958,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tistlia consotensis",
                "strain": "strain=DSM 21585",
                "accession": "GCA_900188055.1",
                "taxid": 1321365,
                "species_taxid": 1321365,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.2632,
                "matched_fragments": 94,
                "total_fragments": 958,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arenimonas composti",
                "strain": "strain=TR7-09",
                "accession": "GCA_000747175.1",
                "taxid": 370776,
                "species_taxid": 370776,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9453,
                "matched_fragments": 72,
                "total_fragments": 958,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arenimonas composti",
                "strain": "strain=DSM 18010",
                "accession": "GCA_000426365.1",
                "taxid": 370776,
                "species_taxid": 370776,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9089,
                "matched_fragments": 73,
                "total_fragments": 958,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Amycolatopsis vancoresmycina",
                "strain": "strain=DSM 44592",
                "accession": "GCA_000388135.1",
                "taxid": 208444,
                "species_taxid": 208444,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7552,
                "matched_fragments": 100,
                "total_fragments": 958,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Amycolatopsis vancoresmycina",
                "strain": "strain=NRRL B-24208",
                "accession": "GCA_000716785.1",
                "taxid": 208444,
                "species_taxid": 208444,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7531,
                "matched_fragments": 120,
                "total_fragments": 958,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 98.96,
            "contamination": 0.46,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_013817305.1",
                "gtdb_species": "s__JACDCY01 sp013817305",
                "ani": 81.404,
                "matched_fragments": 415,
                "total_fragments": 958,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__JACDCY01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017881465.1",
                "gtdb_species": "s__UBA4720 sp017881465",
                "ani": 77.7952,
                "matched_fragments": 149,
                "total_fragments": 958,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__UBA4720",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013816855.1",
                "gtdb_species": "s__UBA4720 sp013816855",
                "ani": 77.5626,
                "matched_fragments": 91,
                "total_fragments": 958,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__UBA4720",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013813605.1",
                "gtdb_species": "s__UBA4720 sp013813605",
                "ani": 77.3625,
                "matched_fragments": 109,
                "total_fragments": 958,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__UBA4720",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003134685.1",
                "gtdb_species": "s__UBA4720 sp003134685",
                "ani": 77.3373,
                "matched_fragments": 150,
                "total_fragments": 958,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__UBA4720",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.97",
                "min_intra_species_ani": "99.96",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_000522985.1",
                "gtdb_species": "s__Gemmatirosa kalamazoonesis",
                "ani": 77.313,
                "matched_fragments": 318,
                "total_fragments": 958,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__Gemmatirosa",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013361745.1",
                "gtdb_species": "s__JABFXC01 sp013361745",
                "ani": 77.277,
                "matched_fragments": 137,
                "total_fragments": 958,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__JABFXC01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013361935.1",
                "gtdb_species": "s__JABFXC01 sp013361935",
                "ani": 77.2499,
                "matched_fragments": 225,
                "total_fragments": 958,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__JABFXC01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.88",
                "min_intra_species_ani": "99.88",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_003131365.1",
                "gtdb_species": "s__UBA4720 sp003131365",
                "ani": 77.2177,
                "matched_fragments": 127,
                "total_fragments": 958,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__UBA4720",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.35",
                "min_intra_species_ani": "95.29",
                "mean_intra_species_af": "0.77",
                "min_intra_species_af": "0.75",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_003171215.1",
                "gtdb_species": "s__Fen-1231 sp003171215",
                "ani": 77.2045,
                "matched_fragments": 164,
                "total_fragments": 958,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__Fen-1231",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.59",
                "min_intra_species_ani": "95.49",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_011525845.1",
                "gtdb_species": "s__PNKF01 sp011525845",
                "ani": 77.1104,
                "matched_fragments": 187,
                "total_fragments": 958,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__PNKF01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.76",
                "min_intra_species_ani": "98.76",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017881545.1",
                "gtdb_species": "s__UBA4720 sp017881545",
                "ani": 76.9756,
                "matched_fragments": 115,
                "total_fragments": 958,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__UBA4720",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001724275.1",
                "gtdb_species": "s__SCN-70-22 sp001724275",
                "ani": 76.9633,
                "matched_fragments": 165,
                "total_fragments": 958,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__SCN-70-22",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_011390885.1",
                "gtdb_species": "s__JAABRT01 sp011390885",
                "ani": 76.8259,
                "matched_fragments": 183,
                "total_fragments": 958,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__JAABRT01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013697785.1",
                "gtdb_species": "s__FEN-1250 sp013697785",
                "ani": 76.73,
                "matched_fragments": 152,
                "total_fragments": 958,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__FEN-1250",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017881685.1",
                "gtdb_species": "s__UBA4720 sp017881685",
                "ani": 76.4484,
                "matched_fragments": 106,
                "total_fragments": 958,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__UBA4720",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_014379355.1",
                "gtdb_species": "s__JACMLX01 sp014379355",
                "ani": 76.4224,
                "matched_fragments": 90,
                "total_fragments": 958,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__JACMLX01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013822285.1",
                "gtdb_species": "s__PNKF01 sp013822285",
                "ani": 76.3234,
                "matched_fragments": 77,
                "total_fragments": 958,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__PNKF01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_014377535.1",
                "gtdb_species": "s__JACMLX01 sp014377535",
                "ani": 75.9057,
                "matched_fragments": 100,
                "total_fragments": 958,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__JACMLX01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.155,
        "cell_length": null,
        "doubling_h": 1.079,
        "growth_tmp": 30.0,
        "optimum_tmp": 27.5,
        "optimum_ph": null,
        "genome_size": 5607935.711,
        "gc_content": 67.113,
        "coding_genes": 4635.5,
        "rRNA16S_genes": 1.666,
        "tRNA_genes": 48.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Gemmatimonadota",
        "c__Gemmatimonadetes",
        "o__Gemmatimonadales",
        "f__Gemmatimonadaceae",
        "g__JACDCY01",
        "s__JACDCY01 sp024654005"
    ],
    "_genome_taxon": [
        "Gemmatimonadaceae",
        "bacterium",
        "d__Bacteria",
        "p__Gemmatimonadota",
        "c__Gemmatimonadetes",
        "o__Gemmatimonadales",
        "f__Gemmatimonadaceae",
        "g__JACDCY01",
        "s__JACDCY01 sp024654005",
        "Bacteria",
        "Gemmatimonadota",
        "Gemmatimonadetes",
        "Gemmatimonadales",
        "Gemmatimonadaceae",
        "JACDCY01",
        "JACDCY01",
        "sp024654005"
    ],
    "_meo": [
        {
            "id": "MEO_0000366",
            "label": "ground water"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}