{
    "type": "genome",
    "identifier": "GCA_024680155.1",
    "organism": "Treponema sp.",
    "title": "Treponema sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Baqiyatallah University of Medical Sciences",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_024680155.1",
        "bioproject": "PRJNA746430",
        "biosample": "SAMN20247319",
        "wgs_master": "JAILCM000000000.1",
        "refseq_category": "na",
        "taxid": "166",
        "species_taxid": "166",
        "organism_name": "Treponema sp.",
        "infraspecific_name": "",
        "isolate": "RUI585",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/08/15",
        "asm_name": "ASM2468015v1",
        "submitter": "Baqiyatallah University of Medical Sciences",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/680/155/GCA_024680155.1_ASM2468015v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-08-15",
    "dateModified": "2022-08-15",
    "datePublished": "2022-08-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Treponema sp."
        ],
        "sample_taxid": [
            "166"
        ],
        "sample_host_organism": [
            "camel"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Iran: Karaj"
        ],
        "sample_host_location_id": [],
        "data_size": "0.826 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 70.49,
        "contamination": 8.33,
        "strain_heterogeneity": 50.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2913577",
        "Number of Sequences": "329",
        "Longest Sequences (bp)": "70104",
        "N50 (bp)": "13660",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "37.2",
        "Number of CDSs": "2164",
        "Average Protein Length": "351.7",
        "Coding Ratio (%)": "78.4",
        "Number of rRNAs": "1",
        "Number of tRNAs": "37",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Treponema berlinense",
                "strain": "strain=ATCC BAA-909",
                "accession": "GCA_900167025.1",
                "taxid": 225004,
                "species_taxid": 225004,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 78,
                "total_fragments": 790,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Treponema ruminis",
                "strain": "strain=DSM 103462",
                "accession": "GCA_014201975.1",
                "taxid": 744515,
                "species_taxid": 744515,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6884,
                "matched_fragments": 58,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Treponema rectale",
                "strain": "strain=DSM 103679",
                "accession": "GCA_014202035.1",
                "taxid": 744512,
                "species_taxid": 744512,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 76.2106,
                "matched_fragments": 55,
                "total_fragments": 790,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Treponema succinifaciens",
                "strain": "strain=DSM 2489",
                "accession": "GCA_000195275.1",
                "taxid": 167,
                "species_taxid": 167,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1953,
                "matched_fragments": 51,
                "total_fragments": 790,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 8.33,
            "strain_heterogeneity": 50.0
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        "gtdb_result": [
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                "accession": "GCF_000421345.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
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                "ani": 79.016,
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                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D",
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                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_ani": "N/A",
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            {
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            },
            {
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                "mean_intra_species_ani": "N/A",
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                "accession": "GCA_017622055.1",
                "gtdb_species": "s__Treponema_D sp017622055",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
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        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
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        "mesophilic_range_tmp": 1.0,
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        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.055,
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        "spiral_cell_shape": 0.888
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    "_gtdb_taxon": [
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        "p__Spirochaetota",
        "c__Spirochaetia",
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        "f__Treponemataceae",
        "g__Treponema_D",
        "s__Treponema_D sp024680155"
    ],
    "_genome_taxon": [
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        "sp.",
        "d__Bacteria",
        "p__Spirochaetota",
        "c__Spirochaetia",
        "o__Treponematales",
        "f__Treponemataceae",
        "g__Treponema_D",
        "s__Treponema_D sp024680155",
        "Bacteria",
        "Spirochaetota",
        "Spirochaetia",
        "Treponematales",
        "Treponemataceae",
        "Treponema",
        "D",
        "Treponema",
        "D",
        "sp024680155"
    ],
    "_meo": [
        {
            "id": "MEO_0000046",
            "label": "rumen"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}