{
    "type": "genome",
    "identifier": "GCA_024684595.1",
    "organism": "Eubacterium sp.",
    "title": "Eubacterium sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Baqiyatallah University of Medical Sciences",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_024684595.1",
        "bioproject": "PRJNA746430",
        "biosample": "SAMN20247168",
        "wgs_master": "JAIKWR000000000.1",
        "refseq_category": "na",
        "taxid": "142586",
        "species_taxid": "142586",
        "organism_name": "Eubacterium sp.",
        "infraspecific_name": "",
        "isolate": "RUI434",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/08/15",
        "asm_name": "ASM2468459v1",
        "submitter": "Baqiyatallah University of Medical Sciences",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/684/595/GCA_024684595.1_ASM2468459v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-08-15",
    "dateModified": "2022-08-15",
    "datePublished": "2022-08-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Eubacterium sp."
        ],
        "sample_taxid": [
            "142586"
        ],
        "sample_host_organism": [
            "camel"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Iran: Karaj"
        ],
        "sample_host_location_id": [],
        "data_size": "0.764 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 90.44,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2669950",
        "Number of Sequences": "175",
        "Longest Sequences (bp)": "93543",
        "N50 (bp)": "22519",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "42.7",
        "Number of CDSs": "2022",
        "Average Protein Length": "365.2",
        "Coding Ratio (%)": "83.0",
        "Number of rRNAs": "0",
        "Number of tRNAs": "32",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Eubacterium ruminantium",
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                "accession": "GCA_900167085.1",
                "taxid": 42322,
                "species_taxid": 42322,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 230,
                "total_fragments": 804,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Coprococcus eutactus",
                "strain": "strain=ATCC 27759",
                "accession": "GCA_000154425.1",
                "taxid": 33043,
                "species_taxid": 33043,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.3262,
                "matched_fragments": 50,
                "total_fragments": 804,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 90.44,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_003520105.1",
                "gtdb_species": "s__Eubacterium_Q sp003520105",
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                "matched_fragments": 395,
                "total_fragments": 804,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Eubacterium_Q",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_017430325.1",
                "gtdb_species": "s__Eubacterium_Q sp017430325",
                "ani": 82.0031,
                "matched_fragments": 478,
                "total_fragments": 804,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Eubacterium_Q",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.28",
                "min_intra_species_ani": "98.28",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_000702245.1",
                "gtdb_species": "s__Eubacterium_Q sp000702245",
                "ani": 81.9228,
                "matched_fragments": 467,
                "total_fragments": 804,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Eubacterium_Q",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.40",
                "min_intra_species_ani": "97.61",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_900108205.1",
                "gtdb_species": "s__Eubacterium_Q ruminantium_A",
                "ani": 80.8966,
                "matched_fragments": 354,
                "total_fragments": 804,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Eubacterium_Q",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900321215.1",
                "gtdb_species": "s__Eubacterium_Q sp900321215",
                "ani": 79.4405,
                "matched_fragments": 247,
                "total_fragments": 804,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Eubacterium_Q",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.10",
                "min_intra_species_ani": "98.50",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.75",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_900167085.1",
                "gtdb_species": "s__Eubacterium_Q ruminantium",
                "ani": 79.1952,
                "matched_fragments": 229,
                "total_fragments": 804,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Eubacterium_Q",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.19",
                "min_intra_species_ani": "98.63",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_900316715.1",
                "gtdb_species": "s__Eubacterium_Q sp900316715",
                "ani": 78.0413,
                "matched_fragments": 110,
                "total_fragments": 804,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Eubacterium_Q",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.73",
                "min_intra_species_ani": "96.50",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 14,
                "status": "-"
            },
            {
                "accession": "GCA_002350525.1",
                "gtdb_species": "s__Eubacterium_Q sp002350525",
                "ani": 77.6847,
                "matched_fragments": 109,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Eubacterium_Q",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.75",
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                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_002314775.1",
                "gtdb_species": "s__UBA1760 sp002314775",
                "ani": 76.6736,
                "matched_fragments": 69,
                "total_fragments": 804,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__UBA1760",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_017437905.1",
                "gtdb_species": "s__Eubacterium_Q sp017437905",
                "ani": 76.1133,
                "matched_fragments": 57,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Eubacterium_Q",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.325,
        "cell_length": 0.215,
        "doubling_h": null,
        "growth_tmp": 36.972,
        "optimum_tmp": 37.071,
        "optimum_ph": null,
        "genome_size": 3245697.074,
        "gc_content": 41.131,
        "coding_genes": 3227.555,
        "rRNA16S_genes": 6.0,
        "tRNA_genes": 59.583,
        "gram_stain": 0.95,
        "sporulation": 0.0,
        "motility": 0.5,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
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        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__Lachnospiraceae",
        "g__Eubacterium_Q",
        "s__Eubacterium_Q sp003520105"
    ],
    "_genome_taxon": [
        "Eubacterium",
        "sp.",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__Lachnospiraceae",
        "g__Eubacterium_Q",
        "s__Eubacterium_Q sp003520105",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Lachnospirales",
        "Lachnospiraceae",
        "Eubacterium",
        "Q",
        "Eubacterium",
        "Q",
        "sp003520105"
    ],
    "_meo": [
        {
            "id": "MEO_0000046",
            "label": "rumen"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}