{ "type": "genome", "identifier": "GCA_024686115.1", "organism": "Loktanella sp.", "title": "Loktanella sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Ocean university of China", "publication": [ {} ], "properties": { "assembly_accession": "GCA_024686115.1", "bioproject": "PRJNA685000", "biosample": "SAMN20394150", "wgs_master": "JAIBDS000000000.1", "refseq_category": "na", "taxid": "1870901", "species_taxid": "1870901", "organism_name": "Loktanella sp.", "infraspecific_name": "", "isolate": "bin.3", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/08/15", "asm_name": "ASM2468611v1", "submitter": "Ocean university of China", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/686/115/GCA_024686115.1_ASM2468611v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-08-15", "dateModified": "2022-08-15", "datePublished": "2022-08-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Loktanella sp." ], "sample_taxid": [ "1870901" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom: Great Yarmouth" ], "sample_host_location_id": [], "data_size": "0.892 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 78.03, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3112868", "Number of Sequences": "108", "Longest Sequences (bp)": "126896", "N50 (bp)": "50452", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "55.4", "Number of CDSs": "3092", "Average Protein Length": "299.0", "Coding Ratio (%)": "89.1", "Number of rRNAs": "0", "Number of tRNAs": "34", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Yoonia tamlensis", "strain": "strain=DSM 26879", "accession": "GCA_900115105.1", "taxid": 390270, "species_taxid": 390270, "relation_to_type": "type", "validated": true, "ani": 77.4834, "matched_fragments": 234, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yoonia maritima", "strain": "strain=DSM 101533", "accession": "GCA_003003285.1", "taxid": 1435347, "species_taxid": 1435347, "relation_to_type": "type", "validated": true, "ani": 77.4133, "matched_fragments": 195, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Loktanella ponticola", "strain": "strain=DSM 101064", "accession": "GCA_014199395.1", "taxid": 1524255, "species_taxid": 1524255, "relation_to_type": "type", "validated": true, "ani": 77.3553, "matched_fragments": 248, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yoonia maricola", "strain": "strain=DSM 29128", "accession": "GCA_002797915.1", "taxid": 420999, "species_taxid": 420999, "relation_to_type": "type", "validated": true, "ani": 77.0081, "matched_fragments": 184, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yoonia rosea", "strain": "strain=DSM 29591", "accession": "GCA_900156505.1", "taxid": 287098, "species_taxid": 287098, "relation_to_type": "type", "validated": true, "ani": 76.9264, "matched_fragments": 235, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yoonia sediminilitoris", "strain": "strain=DSM 29955", "accession": "GCA_003058085.1", "taxid": 1286148, "species_taxid": 1286148, "relation_to_type": "type", "validated": true, "ani": 76.8304, "matched_fragments": 205, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yoonia sediminilitoris", "strain": "strain=CECT 8284", "accession": "GCA_003337495.1", "taxid": 1286148, "species_taxid": 1286148, "relation_to_type": "type", "validated": true, "ani": 76.8304, "matched_fragments": 205, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Loktanella salsilacus", "strain": "strain=DSM 16199", "accession": "GCA_900114485.1", "taxid": 195913, "species_taxid": 195913, "relation_to_type": "type", "validated": true, "ani": 76.8188, "matched_fragments": 190, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yoonia litorea", "strain": "strain=DSM 29433", "accession": "GCA_900114675.1", "taxid": 1123755, "species_taxid": 1123755, "relation_to_type": "type", "validated": true, "ani": 76.6562, "matched_fragments": 146, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter indolifex", "strain": "strain=DSM 14862", "accession": "GCA_022788655.1", "taxid": 225422, "species_taxid": 225422, "relation_to_type": "type", "validated": true, "ani": 76.6157, "matched_fragments": 113, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Octadecabacter arcticus", "strain": "strain=238", "accession": "GCA_000155735.2", "taxid": 53946, "species_taxid": 53946, "relation_to_type": "type", "validated": true, "ani": 76.5829, "matched_fragments": 174, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marivivens aquimaris", "strain": "strain=GSB7", "accession": "GCA_015220045.1", "taxid": 2774876, "species_taxid": 2774876, "relation_to_type": "type", "validated": true, "ani": 76.4823, "matched_fragments": 81, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter marinus", "strain": "strain=DSM 23422", "accession": "GCA_900116285.1", "taxid": 394264, "species_taxid": 394264, "relation_to_type": "type", "validated": true, "ani": 76.4743, "matched_fragments": 120, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter geojensis", "strain": "strain=DSM 101063", "accession": "GCA_013407805.1", "taxid": 1342299, "species_taxid": 1342299, "relation_to_type": "type", "validated": true, "ani": 76.4424, "matched_fragments": 130, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cognatiyoonia koreensis", "strain": "strain=DSM 17925", "accession": "GCA_900109295.1", "taxid": 364200, "species_taxid": 364200, "relation_to_type": "type", "validated": true, "ani": 76.4156, "matched_fragments": 159, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter geojensis", "strain": "strain=MM-124", "accession": "GCA_000622325.1", "taxid": 1342299, "species_taxid": 1342299, "relation_to_type": "type", "validated": true, "ani": 76.4123, "matched_fragments": 133, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marivivens niveibacter", "strain": "strain=MCCC 1A06712", "accession": "GCA_002150005.2", "taxid": 1930667, "species_taxid": 1930667, "relation_to_type": "type", "validated": true, "ani": 76.3549, "matched_fragments": 121, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooctadecabacter jejudonensis", "strain": "strain=CECT 8397", "accession": "GCA_900172275.1", "taxid": 1391910, "species_taxid": 1391910, "relation_to_type": "type", "validated": true, "ani": 76.3211, "matched_fragments": 148, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phaeobacter porticola", "strain": "strain=P97", "accession": "GCA_001888185.1", "taxid": 1844006, "species_taxid": 1844006, "relation_to_type": "type", "validated": true, "ani": 76.2698, "matched_fragments": 82, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mameliella sediminis", "strain": "strain=DP3N28-2", "accession": "GCA_019218285.1", "taxid": 2836866, "species_taxid": 2836866, "relation_to_type": "type", "validated": true, "ani": 76.2315, "matched_fragments": 81, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ascidiaceihabitans donghaensis", "strain": "strain=CECT 8599", "accession": "GCA_900302465.1", "taxid": 1510460, "species_taxid": 1510460, "relation_to_type": "type", "validated": true, "ani": 76.2233, "matched_fragments": 126, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassococcus halodurans", "strain": "strain=DSM 26915", "accession": "GCA_900108225.1", "taxid": 373675, "species_taxid": 373675, "relation_to_type": "type", "validated": true, "ani": 76.1892, "matched_fragments": 125, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Loktanella fryxellensis", "strain": "strain=DSM 16213", "accession": "GCA_900110065.1", "taxid": 245187, "species_taxid": 245187, "relation_to_type": "type", "validated": true, "ani": 76.0606, "matched_fragments": 110, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alexandriicola marinus", "strain": "strain=LZ-14", "accession": "GCA_004000435.1", "taxid": 2081710, "species_taxid": 2081710, "relation_to_type": "type", "validated": true, "ani": 76.0315, "matched_fragments": 73, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Litoreibacter janthinus", "strain": "strain=DSM 26921", "accession": "GCA_900111945.1", "taxid": 670154, "species_taxid": 670154, "relation_to_type": "type", "validated": true, "ani": 76.0223, "matched_fragments": 102, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliiroseovarius sediminilitoris", "strain": "strain=DSM 29439", "accession": "GCA_900109955.1", "taxid": 1173584, "species_taxid": 1173584, "relation_to_type": "type", "validated": true, "ani": 75.9972, "matched_fragments": 87, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Loktanella atrilutea", "strain": "strain=DSM 29326", "accession": "GCA_900128995.1", "taxid": 366533, "species_taxid": 366533, "relation_to_type": "type", "validated": true, "ani": 75.9799, "matched_fragments": 100, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria denitrificans", "strain": "strain=CECT 5091", "accession": "GCA_001458295.1", "taxid": 1715692, "species_taxid": 1715692, "relation_to_type": "type", "validated": true, "ani": 75.7465, "matched_fragments": 93, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum tesquicola", "strain": "strain=A-36s", "accession": "GCA_024128855.1", "taxid": 540254, "species_taxid": 540254, "relation_to_type": "type", "validated": true, "ani": 75.6219, "matched_fragments": 53, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 78.03, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_905182645.1", "gtdb_species": "s__Yoonia sp905182645", "ani": 85.3927, "matched_fragments": 662, "total_fragments": 981, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Yoonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { 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